Breeding-Related Mixed-Effects Models

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Documentation for package ‘lme4breeding’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

adjBeta	Adjusting fixed effects for intercept
balanceData	Balance a dataset
condVarRotated	Get the rotated conditional variance matrix
Dtable	Get the hypertable for predictions
fitted-method	Relationship-based mixed-effects model fits
getMME	Build the mixed model equations from a lmeb object
lme4breeding	*L*inear *m*ixed *e*quations *4* *B*reeding
lmeb	Fit breeding-related mixed-effects models
lmeb-class	Relationship-based mixed-effects model fits
lmebreed	Fit breeding-related mixed-effects models
mkMmeIndex	Table to track effects
predict.lmeb	Predict form of a LMM fitted with lmeb/lmebreed
predict.lmebreed	Predict form of a LMM fitted with lmeb/lmebreed
ranef-method	Relationship-based mixed-effects model fits
residuals-method	Relationship-based mixed-effects model fits
smm	sparse model matrix
umat	Rotation matrix UDU' decomposition