R: Helper Functions for Bayesian Analyses

# Helper Functions for Bayesian Analyses

## Documentation for package ‘extras’ version 0.10.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A C D E F I K L N O P Q R S U V X Z

## -- A --

as_list | As List
as_list.default | As List
as_list_unnamed | As List
as_list_unnamed.default | As List

## -- C --

chk_index | Check Index
chk_indices | Check Indices
chk_pars | Check Parameter Names

## -- D --

dbern | Bernoulli Distribution
dev_bern | Bernoulli Deviances
dev_beta_binom | Beta-Binomial Deviances
dev_binom | Binomial Deviances
dev_gamma | Gamma Deviances
dev_gamma_pois | Gamma-Poisson Deviances
dev_gamma_pois_zi | Zero-Inflated Gamma-Poisson Deviances
dev_lnorm | Log-Normal Deviances
dev_neg_binom | Negative Binomial Deviances
dev_norm | Normal Deviances
dev_pois | Poisson Deviances
dev_pois_zi | Zero-Inflated Poisson Deviances
dev_skewlnorm | Skew-Lognormal Deviances
dev_skewnorm | Skew Normal Deviances
dev_student | Student's t Deviances
direction | Direction of a distribution
directional_information | Directional information
dskewlnorm | Skew-Lognormal Distribution
dskewnorm | Skew-Normal Distribution

## -- E --

exp10 | Exponential Transformation of Base 10
exp2 | Exponential Transformation of Base 2

## -- F --

fabs | Absolute
fill_all | Fill All Values
fill_all.character | Fill All Values
fill_all.integer | Fill All Values
fill_all.logical | Fill All Values
fill_all.numeric | Fill All Values
fill_na | Fill Missing Values
fill_na.character | Fill Missing Values
fill_na.integer | Fill Missing Values
fill_na.logical | Fill Missing Values
fill_na.numeric | Fill Missing Values

## -- I --

ilog | Inverse Log Transformation
ilog10 | Inverse Log Base 10 Transformation
ilog2 | Inverse Log Base 2 Transformation
ilogit | Inverse Logistic Transformation
invlogit | Inverse Logistic Transformation
inv_logit | Inverse Logistic Transformation
inv_odds | Inverse Odds

## -- K --

kurtosis | Kurtosis

## -- L --

log10<- | Log Base 10 Transformation
log2<- | Log Base 2 Transformation
log<- | Log Transformation
logit | Logistic Transformation
logit<- | Logistic Transformation
log_lik_bern | Bernoulli Log-Likelihood
log_lik_beta | Beta Log-Likelihood
log_lik_beta_binom | Beta-Binomial Log-Likelihood
log_lik_binom | Binomial Log-Likelihood
log_lik_exp | Exponential Log-Likelihood
log_lik_gamma | Gamma Log-Likelihood
log_lik_gamma_pois | Gamma-Poisson Log-Likelihood
log_lik_gamma_pois_zi | Zero-Inflated Gamma-Poisson Log-Likelihood
log_lik_lnorm | Log-Normal Log-Likelihood
log_lik_neg_binom | Negative Binomial Log-Likelihood
log_lik_norm | Normal Log-Likelihood
log_lik_pois | Poisson Log-Likelihood
log_lik_pois_zi | Zero-Inflated Poisson Log-Likelihood
log_lik_skewlnorm | Skew-Lognormal Log-Likelihood
log_lik_skewnorm | Skew Normal Log-Likelihood
log_lik_student | Student's t Log-Likelihood
log_lik_unif | Uniform Log-Likelihood
log_odds | Log Odds
log_odds<- | Inverse Log Odds Transformation
log_odds_ratio | Log-Odds Ratio
log_odds_ratio2 | Log Odds Ratio2
lower | Lower Credible Limit

## -- N --

numericise | Numericise (or Numericize)
numericise.array | Numericise (or Numericize)
numericise.data.frame | Numericise (or Numericize)
numericise.Date | Numericise (or Numericize)
numericise.double | Numericise (or Numericize)
numericise.factor | Numericise (or Numericize)
numericise.hms | Numericise (or Numericize)
numericise.integer | Numericise (or Numericize)
numericise.logical | Numericise (or Numericize)
numericise.matrix | Numericise (or Numericize)
numericise.POSIXct | Numericise (or Numericize)
numericize | Numericise (or Numericize)

## -- O --

odds | Odds
odds<- | Inverse Odds Transformation
odds_ratio | Odds Ratio
odds_ratio2 | Odds Ratio2

## -- P --

p2info | Directional information
p2svalue | Surprisal Value
par_pattern | Parameter Pattern
pbern | Bernoulli Distribution
pextreme | Extreme Probability
phi | Phi
pow | Power
probability_direction | Probability of Direction
prob_bern | Bernoulli Cumulative Distribution Function
prob_beta | Beta Cumulative Distribution Function
prob_beta_binom | Beta-Binomial Cumulative Distribution Function
prob_binom | Binomial Cumulative Distribution Function
prob_exp | Exponential Cumulative Distribution Function
prob_gamma | Gamma Cumulative Distribution Function
prob_gamma_pois | Gamma-Poisson Cumulative Distribution Function
prob_gamma_pois_zi | Zero-Inflated Gamma-Poisson Cumulative Distribution Function
prob_lnorm | Log-Normal Cumulative Distribution Function
prob_neg_binom | Negative Binomial Cumulative Distribution Function
prob_norm | Normal Cumulative Distribution Function
prob_pois | Poisson Cumulative Distribution Function
prob_pois_zi | Zero-Inflated Poisson Cumulative Distribution Function
prob_skewlnorm | Skew-Lognormal Cumulative Distribution Function
prob_skewnorm | Skew Normal Cumulative Distribution Function
prob_student | Student's t Cumulative Distribution Function
prob_unif | Uniform Cumulative Distribution Function
proportional_change | Proportional Change
proportional_change2 | Proportional Change2
proportional_difference | Proportional Difference
proportional_difference2 | Proportional Difference2
pskewlnorm | Skew-Lognormal Distribution
pskewnorm | Skew-Normal Distribution
pvalue | Bayesian P-Value
pzeros | Proportion of Zeros

## -- Q --

qbern | Bernoulli Distribution
qskewlnorm | Skew-Lognormal Distribution
qskewnorm | Skew-Normal Distribution
quant_bern | Bernoulli Quantile Function
quant_beta | Beta Quantile Function
quant_binom | Binomial Quantile Function
quant_exp | Exponential Quantile Function
quant_gamma | Gamma Quantile Function
quant_gamma_pois | Gamma-Poisson Quantile Function
quant_gamma_pois_zi | Zero-Inflated Gamma-Poisson Quantile Function
quant_lnorm | Log-Normal Quantile Function
quant_neg_binom | Negative Binomial Quantile Function
quant_norm | Normal Quantile Function
quant_pois | Poisson Quantile Function
quant_pois_zi | Zero-Inflated Poisson Quantile Function
quant_skewlnorm | Skew-Lognormal Quantile Function
quant_skewnorm | Skew Normal Quantile Function
quant_student | Student's t Quantile Function
quant_unif | Uniform Quantile Function

## -- R --

ran_bern | Bernoulli Random Samples
ran_beta_binom | Beta-Binomial Random Samples
ran_binom | Binomial Random Samples
ran_gamma | Gamma Random Samples
ran_gamma_pois | Gamma-Poisson Random Samples
ran_gamma_pois_zi | Zero-Inflated Gamma-Poisson Random Samples
ran_lnorm | Log-Normal Random Samples
ran_neg_binom | Negative Binomial Random Samples
ran_norm | Normal Random Samples
ran_pois | Poisson Random Samples
ran_pois_zi | Zero-Inflated Poisson Random Samples
ran_skewlnorm | Skew-Lognormal Random Samples
ran_skewnorm | Skew Normal Random Samples
ran_student | Student's t Random Samples
rbern | Bernoulli Distribution
res_bern | Bernoulli Residuals
res_beta_binom | Beta-Binomial Residuals
res_binom | Binomial Residuals
res_gamma | Gamma Residuals
res_gamma_pois | Gamma-Poisson Residuals
res_gamma_pois_zi | Zero-Inflated Gamma-Poisson Residuals
res_lnorm | Log-Normal Residuals
res_neg_binom | Negative Binomial Residuals
res_norm | Normal Residuals
res_pois | Poisson Residuals
res_pois_zi | Zero-Inflated Poisson Residuals
res_skewlnorm | Skew-Lognormal Residuals
res_skewnorm | Skew Normal Residuals
res_student | Student's t Residuals
rskewlnorm | Skew-Lognormal Distribution
rskewnorm | Skew-Normal Distribution

## -- S --

sens_beta | Adjust Beta Distribution Parameters for Sensitivity Analyses
sens_exp | Adjust Exponential Distribution Parameters for Sensitivity Analyses
sens_gamma | Adjust Gamma Distribution Parameters for Sensitivity Analyses
sens_gamma_pois | Adjust Gamma-Poisson Distribution Parameters for Sensitivity Analyses
sens_gamma_pois_zi | Adjust Zero-Inflated Gamma-Poisson Distribution Parameters for Sensitivity Analyses
sens_lnorm | Adjust Log-Normal Distribution Parameters for Sensitivity Analysis
sens_neg_binom | Adjust Negative Binomial Distribution Parameters for Sensitivity Analyses
sens_norm | Adjust Normal Distribution Parameters for Sensitivity Analyses
sens_pois | Adjust Poisson Distribution Parameters for Sensitivity Analyses
sens_skewlnorm | Adjust Skew-Lognormal Distribution Parameters for Sensitivity Analyses
sens_skewnorm | Adjust Skew Normal Distribution Parameters for Sensitivity Analyses
sens_student | Adjust Student's t Distribution Parameters for Sensitivity Analyses
sextreme | Extreme Surprisal
skewness | Skewness
step | Step
svalue | Surprisal Value

## -- U --

upper | Upper Credible Limit

## -- V --

variance | Variance
vld_index | Check Index
vld_indices | Check Indices
vld_pars | Check Parameter Names

## -- X --

xtr_ci | Credible Intervals
xtr_ci_eti | Equal-Tailed Interval
xtr_ci_hdi | Highest Density Interval
xtr_mean | Mean
xtr_median | Median
xtr_rope | Region of Practical Equivalence
xtr_sd | Standard Deviation

## -- Z --

zeros | Zeros
zscore | Z-Score