advanced_pupil_trajectory_table
                        Summarise an advanced pupil trajectory
analysis_bundle_table   Analysis-Bundle Status Table
analysis_manifest_table
                        Summarise Manifest Components
apply_transformation_recipe
                        Apply a Recorded Transformation Recipe
as.data.frame.gp3bayes_pupil_contract
                        Convert a pupil contract to a transparent table
as.data.frame.gp3bayes_pupil_estimand
                        Convert a pupil estimand to a data frame
as_pupil_prediction_draws
                        Create a lightweight pupil prediction object
                        from frozen draws
assess_binary_prior_sensitivity
                        Assess Binary Prior Sensitivity
assess_duration_prior_sensitivity
                        Assess Duration Prior Sensitivity
assess_powerscaled_sensitivity
                        Assess Power-Scaled Prior and Likelihood
                        Sensitivity
audit_advanced_pupil_identifiability
                        Audit empirical support for an advanced pupil
                        model specification
audit_backend_parity    Audit Posterior Parity Across rstan and
                        cmdstanr
audit_binocular_pupil_readiness
                        Audit binocular pupil availability and
                        agreement descriptively
audit_design_support    Audit Overall Design Support
audit_duration_boundaries
                        Audit Duration Range and Censoring Boundaries
audit_duration_unit_invariance
                        Audit Duration-Unit Invariance
audit_estimand_invariance
                        Audit Estimand Invariance Against a Declared
                        Tolerance
audit_fixed_effect_design
                        Audit the Fixed-Effects Design Matrix
audit_missingness_structure
                        Audit Missingness Structure Before Model
                        Fitting
audit_model_readiness   Audit Data Readiness for an Approved Model
                        Contract
audit_model_readiness_strict
                        Run a Strict Model-Readiness Audit
audit_prediction_support
                        Audit Prediction Support
audit_pupil_computational_budget
                        Audit computational complexity before fitting
                        an advanced pupil model
audit_pupil_measurement_context
                        Audit pupil measurement and confound context
audit_pupil_measurement_model
                        Audit a declared measurement model against data
audit_pupil_missingness
                        Audit missingness in an advanced pupil
                        specification
audit_pupil_predictive_calibration
                        Audit posterior predictive calibration on
                        explicit evaluation data
audit_pupil_readiness   Audit pupil-timecourse readiness
audit_pupil_temporal_dependence
                        Audit empirical temporal dependence before
                        model fitting
audit_random_effects_support
                        Audit Random-Effects Support
backend_capabilities    Report Bayesian Backend Capabilities
backend_environment_table
                        Backend-Environment Table
backend_parity_table    Backend-Parity Table
bayesian_backend_capabilities
                        Report Optional Bayesian Backend Capabilities
binary_calibration_error
                        Binary Calibration Error
binary_calibration_table
                        Binary Calibration Table
binary_calibration_uncertainty
                        Binary Calibration Uncertainty
binary_calibration_uncertainty_table
                        Binary Calibration-Uncertainty Table
binary_confusion_table
                        Binary Confusion Table
binary_group_calibration
                        Grouped Binary Calibration
binary_precision_recall_curve
                        Binary Precision-Recall Curve
binary_prediction_scores
                        Binary Prediction Scores
binary_roc_curve        Binary ROC Curve
binary_threshold_metrics
                        Binary Threshold-Metric Curve
build_model_formula     Build an Approved Model Formula
capture_gp3bayes_schema
                        Capture the Structural Schema of a gp3bayes
                        Object
check_advanced_pupil_prior_predictive
                        Check advanced pupil priors through prior-only
                        simulation
check_binary_posterior_predictive
                        Check Binary Posterior Predictive Behaviour
check_binary_ppc_details
                        Run Detailed Binary Posterior Predictive Checks
check_binary_prior_predictive
                        Check Binary Prior Predictive Behaviour
check_cmdstan_backend   Check the CmdStanR Backend
check_duration_posterior_predictive
                        Check Duration Posterior Predictive Behaviour
check_duration_ppc_details
                        Run Detailed Duration Posterior Predictive
                        Checks
check_duration_prior_predictive
                        Check Duration Prior Predictive Behaviour
check_model_ppc         Check Posterior Predictive Behaviour
check_pupil_posterior_predictive
                        Run pupil-specific posterior predictive checks
check_pupil_prior_predictive
                        Check the approved pupil priors predictively
collect_model_evidence
                        Collect Model Evidence Without Declaring Model
                        Adequacy
compare_analysis_manifests
                        Compare Analysis Manifests
compare_estimand_sensitivity
                        Compare Estimand Sensitivity Across Alternative
                        Fits
compare_gp3bayes_schemas
                        Compare gp3bayes Object Schemas
compare_psis_loo        Compare Models with PSIS-LOO
compare_pupil_autocorrelation
                        Compare residual autocorrelation across fitted
                        advanced models
compare_pupil_lfo       Compare executed leave-future-out validations
compare_pupil_models    Compare fitted pupil models predictively
compare_pupil_sensitivity_estimands
                        Compare declared pupil sensitivity estimands
compute_kfold_cv        Compute Governed Exact K-Fold Cross-Validation
compute_loo_model_weights
                        Compute LOO Model-Averaging Weights
compute_psis_loo        Compute PSIS-LOO for a gp3bayes Fit
compute_psis_loo_from_log_lik
                        Compute PSIS-LOO from a Log-Likelihood Matrix
create_advanced_pupil_prior_specification
                        Create an advanced pupil prior specification
create_analysis_bundle
                        Create a Structured Post-Fit Analysis Bundle
create_analysis_figure_set
                        Create Publication Figures from an Analysis
                        Bundle
create_analysis_manifest
                        Create an Analysis Manifest
create_binary_model_report
                        Create a Structured Binary Model Report
create_brms_sbc_plan    Create a brms-Based Simulation-Based
                        Calibration Plan
create_complete_evidence_inventory
                        Create a Complete Evidence Inventory
create_contrast_coding_sensitivity_specification
                        Create a Contrast-Coding Sensitivity
                        Specification
create_custom_sbc_plan
                        Create an Expert Custom SBC Plan
create_diagnostic_dashboard
                        Create a Diagnostic Dashboard Object
create_diagnostic_dashboard_figures
                        Create Diagnostic Dashboard Figures
create_duration_model_report
                        Create a Structured Duration Model Report
create_duration_unit_sensitivity_specification
                        Create a Duration-Unit Sensitivity
                        Specification
create_figure_set       Create a Named Figure Set
create_group_deletion_sensitivity_plan
                        Create a Group-Deletion Sensitivity Plan
create_loo_influence_atlas
                        Create a LOO Influence Atlas
create_model_card       Create a gp3bayes Model Card
create_model_contract   Create an Approved Bayesian Model Contract
create_model_evidence_report
                        Create a Model Evidence Report
create_model_specification
                        Create a Complete Model Specification
create_prediction_contrast_profile
                        Create a Prediction Contrast Profile
create_prediction_grid
                        Create a Governed Prediction Grid
create_prediction_profile
                        Create a Numeric Prediction Profile
create_prediction_surface
                        Create a Two-Dimensional Prediction Surface
create_predictive_distribution_atlas
                        Create a Posterior-Predictive Distribution
                        Atlas
create_predictor_scaling_sensitivity_specification
                        Create a Predictor-Scaling Sensitivity
                        Specification
create_prior_specification
                        Create a Backend-Independent Prior
                        Specification
create_publication_registry
                        Create a Publication Registry
create_publication_table_set
                        Extract Publication Tables from an Analysis
                        Bundle
create_pupil_advanced_sensitivity_suite
                        Create a pre-fit advanced pupillometry
                        sensitivity suite
create_pupil_arma_spec
                        Create an explicit bounded ARMA configuration
create_pupil_contract   Create a governed pupil-timecourse contract
create_pupil_gp_spec    Create a Gaussian-process configuration for
                        pupil trajectories
create_pupil_lfo_plan   Create an explicit leave-future-out validation
                        plan
create_pupil_measurement_model
                        Create a governed measurement-uncertainty
                        specification
create_pupil_missingness_spec
                        Create a governed missingness specification
create_pupil_model_set
                        Create a named set of fitted pupil models
create_pupil_sensitivity_suite
                        Create a governed pupil sensitivity suite
create_pupil_validation_plan
                        Create an explicit pupil predictive-validation
                        plan
create_random_slope_sensitivity_plan
                        Create a Random-Slope Sensitivity Plan
create_reporting_checklist
                        Create a Reporting Checklist
create_sensitivity_suite_plan
                        Create a Sensitivity Suite Plan
create_transformation_recipe
                        Create a Reusable Transformation Recipe
design_support_table    Design-Support Table
detect_binary_separation
                        Detect Separation in the Binary Fixed-Effects
                        Screen
diagnose_advanced_pupil_fit
                        Diagnose an advanced pupil fit
diagnose_binary_fit     Diagnose a Fitted Binary Model
diagnose_duration_fit   Diagnose a Fitted Duration Model
diagnose_model_fit      Diagnose an Approved gp3bayes Fit
diagnose_pupil_fit      Diagnose temporal and sampling behaviour of a
                        pupil fit
diagnostic_dashboard_table
                        Diagnostic Dashboard Table
duration_pit_table      Duration Probability-Integral-Transform Table
duration_prediction_scores
                        Duration Prediction Scores
duration_qq_table       Duration Predictive Q-Q Table
duration_quantile_calibration
                        Duration Quantile Calibration
duration_tail_check     Duration Tail Check
estimand_sensitivity_table
                        Estimand Sensitivity Table
estimate_binocular_pupil_trajectory
                        Estimate joint binocular posterior trajectories
estimate_model_estimands
                        Estimate the Approved Primary Estimands
estimate_pupil_auc      Estimate area under a declared pupil-response
                        window
estimate_pupil_dynamic_contrast
                        Estimate a dynamic posterior contrast between
                        two pupil conditions
estimate_pupil_peak     Estimate posterior peak pupil response inside a
                        declared window
estimate_pupil_peak_latency
                        Estimate posterior peak latency inside a
                        declared window
estimate_pupil_residual_scale
                        Estimate the residual-scale trajectory from a
                        distributional model
estimate_pupil_response_parameters
                        Estimate nonlinear response-shape parameters
estimate_pupil_threshold_duration
                        Estimate posterior duration above a
                        prespecified dynamic threshold
estimate_pupil_trajectory
                        Estimate posterior pupil trajectories
estimate_pupil_trajectory_derivative
                        Estimate posterior temporal derivatives of a
                        pupil trajectory
estimate_pupil_window   Estimate a declared-window mean pupil response
estimate_standardized_duration_estimands
                        Estimate Design-Standardised Duration Estimands
estimate_standardized_probability_contrast
                        Estimate a Design-Standardised Binary
                        Probability Contrast
evaluate_pathological_simulation
                        Evaluate a Pathological Simulation Against the
                        Contract Gate
evidence_inventory_table
                        Evidence Inventory Table
extract_expected_predictions
                        Extract Expected Posterior Predictions
extract_linear_predictions
                        Extract Linear-Predictor Draws
extract_log_likelihood
                        Extract Pointwise Log-Likelihood Draws
extract_posterior_draws
                        Extract Posterior Draws from a gp3bayes Fit
extract_posterior_predictions
                        Extract Posterior Predictive Draws
extract_sampler_diagnostics
                        Extract NUTS Sampler Diagnostics
fit_advanced_pupil_model
                        Fit an advanced pupil model using rstan
fit_advanced_pupil_model_backend
                        Fit an advanced pupil model through an approved
                        brms backend
fit_advanced_pupil_model_cmdstanr
                        Fit an advanced pupil model using cmdstanr
fit_binary_model        Fit an Approved Hierarchical Binary Model
fit_binary_model_backend
                        Fit a Binary Model with a Selected Full-MCMC
                        Backend
fit_binocular_pupil_model
                        Fit a joint binocular pupil model
fit_duration_model      Fit an Approved Hierarchical Lognormal Duration
                        Model
fit_duration_model_backend
                        Fit a Duration Model with a Selected Full-MCMC
                        Backend
fit_pupil_model         Fit a pupil model through the fixed rstan route
fit_pupil_model_backend
                        Fit the restricted pupil time-course model with
                        an approved backend
fit_pupil_model_cmdstanr
                        Fit a pupil model through the fixed cmdstanr
                        route
fit_pupil_response_shape_model
                        Fit the experimental nonlinear response-shape
                        model
freeze_analysis_manifest
                        Freeze an Analysis Manifest
freeze_gp3bayes_schema
                        Freeze a gp3bayes Object Schema
gazepoint_pupil_mapping_table
                        Return the Gazepoint pupil mapping audit table
gp3bayes_specification_traceability
                        Specification-Closure Traceability Matrix
group_deletion_sensitivity_table
                        Group-Deletion Sensitivity Table
group_effect_draws_table
                        Group-Level Posterior Draw Table
group_effect_rank_probability_table
                        Group-Level Rank-Probability Table
group_effect_table      Group-Level Effect Table
group_prediction_summary
                        Group Prediction Summary
grouped_prediction_check
                        Grouped Posterior Predictive Check
identify_identifier_like_predictors
                        Identify Identifier-Like Numeric Predictors
identify_loo_influential_observations
                        Identify Influential PSIS-LOO Observations
identify_mcmc_issues    Identify MCMC Diagnostic Flags
inspect_gazepoint_pupil_schema
                        Inspect verified Gazepoint pupil and gaze
                        fields
interaction_prior_summary
                        Summarise Separate Interaction Prior Metadata
invert_transformation_recipe
                        Invert a Recorded Transformation Recipe
loo_diagnostic_table    LOO Diagnostic Table
loo_flagged_data        Flagged LOO Observation Data
loo_group_influence_table
                        Aggregate LOO Influence by a Declared Group
loo_influence_atlas_table
                        LOO Influence Atlas Table
loo_influence_summary   LOO Influence Summary
loo_pointwise_table     Pointwise LOO Table
loo_summary_table       LOO Summary Table
manifest_comparison_table
                        Manifest-Comparison Table
materialize_pupil_advanced_sensitivity_scenario
                        Materialize one advanced sensitivity scenario
materialize_pupil_sensitivity_scenario
                        Materialize one declared pupil sensitivity
                        scenario
mcmc_diagnostic_table   Modern MCMC Diagnostic Table
missingness_audit_table
                        Missingness-Audit Table
model_card_table        Model-Card Evidence Table
model_comparison_table
                        LOO Model-Comparison Table
model_evidence_table    Model-Evidence Table
model_weights_table     LOO Model-Weight Table
model_workflow_status   Summarise Workflow Stage Completion
plot.gp3bayes_kfold_cv
                        Plot Governed Exact K-Fold Results
plot.gp3bayes_strict_readiness_audit
                        Plot a Strict Readiness Audit
plot_advanced_pupil_simulation
                        Plot simulated advanced pupil trajectories
plot_advanced_pupil_trajectory
                        Plot an advanced posterior pupil trajectory
plot_autocorrelation    Autocorrelation Diagnostic Plot
plot_backend_environment_gg
                        Plot Backend Environment Checks with ggplot2
plot_backend_parity_gg
                        Plot Backend Parity with ggplot2
plot_binary_calibration
                        Binary Calibration Plot
plot_binary_calibration_uncertainty
                        Plot Binary Calibration Uncertainty
plot_binary_group_calibration
                        Grouped Binary Calibration Plot
plot_binary_precision_recall
                        Binary Precision-Recall Plot
plot_binary_roc         Binary ROC Plot
plot_binary_threshold_metrics
                        Binary Threshold-Metric Plot
plot_binocular_pupil_trajectory
                        Plot binocular posterior trajectories
plot_design_support_gg
                        Plot Design-Support Components with ggplot2
plot_diagnostic_dashboard
                        Plot Diagnostic Dashboard Availability
plot_duration_pit       Duration PIT Plot
plot_duration_qq        Duration Predictive Q-Q Plot
plot_duration_quantile_calibration
                        Duration Quantile-Calibration Plot
plot_duration_tail      Duration Tail-Check Plot
plot_estimand_intervals
                        Estimand Interval Plot
plot_estimand_sensitivity_gg
                        Plot Estimand Sensitivity with ggplot2
plot_exceedance_probability
                        Prediction Exceedance-Probability Plot
plot_group_deletion_sensitivity
                        Plot Group-Deletion Sensitivity
plot_group_effect_distribution
                        Plot Group-Effect Posterior Distributions
plot_group_effect_rank_probability
                        Plot Group-Effect Rank Probabilities
plot_group_effects      Group-Effect Plot
plot_group_predictions
                        Group Prediction Plot
plot_grouped_prediction_check
                        Grouped Posterior Predictive Plot
plot_loo_group_elpd     Plot Grouped Pointwise ELPD Contribution
plot_loo_group_influence
                        Plot Grouped LOO Influence
plot_loo_influence      LOO Influence Plot
plot_loo_influence_rank
                        Plot Ranked LOO Influence
plot_loo_pareto_vs_elpd
                        Plot Pareto-k versus Pointwise ELPD
plot_loo_pointwise_elpd
                        Plot Pointwise LOO ELPD
plot_manifest_comparison_gg
                        Plot Manifest Differences with ggplot2
plot_mcmc_quality       MCMC Review-Flag Plot
plot_missingness_gg     Plot Missingness Fractions with ggplot2
plot_model_comparison   LOO Model-Comparison Plot
plot_model_evidence_gg
                        Plot Model-Evidence Availability with ggplot2
plot_model_weights      LOO Model-Weight Plot
plot_posterior_areas    Posterior Area Plot
plot_posterior_correlations
                        Posterior Correlation Plot
plot_posterior_density
                        Posterior Density Plot
plot_posterior_intervals
                        Posterior Interval Plot
plot_posterior_pairs    Posterior Pairs Plot
plot_powerscale_sensitivity_gg
                        Plot Power-Scale Sensitivity with ggplot2
plot_ppc_statistic      Posterior Predictive Statistic Plot
plot_prediction_contrast_profile
                        Plot a Prediction Contrast Profile
plot_prediction_draws   Prediction-Draw Distribution Plot
plot_prediction_gradient
                        Plot Prediction-Profile Gradients
plot_prediction_interval_width
                        Prediction Interval-Width Plot
plot_prediction_intervals
                        Prediction-Interval Plot
plot_prediction_profile
                        Plot a Prediction Profile
plot_prediction_rank_probabilities
                        Prediction Rank-Probability Plot
plot_prediction_score_uncertainty
                        Plot Prediction Score Uncertainty
plot_prediction_support
                        Prediction-Support Plot
plot_prediction_surface
                        Plot a Prediction Surface
plot_prediction_surface_uncertainty
                        Plot Prediction-Surface Uncertainty
plot_predictive_atlas_statistics
                        Plot Predictive Atlas Statistics
plot_predictive_coverage
                        Predictive-Coverage Plot
plot_predictive_quantile_envelope
                        Plot Posterior-Predictive Quantile Envelope
plot_predictive_residuals
                        Predictive-Residual Plot
plot_prior_posterior_contraction
                        Plot Prior-to-Posterior Contraction
plot_prior_posterior_density
                        Plot Declared Prior and Posterior Densities
plot_prior_posterior_intervals
                        Plot Prior and Posterior Intervals
plot_prior_posterior_shift
                        Plot Prior-to-Posterior Location Shift
plot_prior_sensitivity
                        Plot Prior-Scale Sensitivity
plot_prior_sensitivity_scenarios
                        Plot Prior-Sensitivity Scenario Maxima
plot_pupil_autocorrelation_comparison
                        Plot residual autocorrelation comparison
plot_pupil_dynamic_contrast
                        Plot a dynamic pupil condition contrast
plot_pupil_estimand     Plot declared-window pupil estimands
plot_pupil_gp_hyperparameters
                        Plot Gaussian-process hyperparameters
plot_pupil_identifiability_audit
                        Plot advanced identifiability/design-support
                        audit
plot_pupil_lfo          Plot leave-future-out scores
plot_pupil_measurement_audit
                        Plot gaze/PFE and luminance measurement-context
                        evidence
plot_pupil_measurement_uncertainty
                        Plot measurement-uncertainty audit
plot_pupil_missingness
                        Plot missing-response fraction over time
plot_pupil_model_comparison
                        Plot predictive model comparison
plot_pupil_model_complexity
                        Plot advanced model computational complexity
plot_pupil_observed_trajectory
                        Plot observed pupil trajectories
plot_pupil_posterior_trajectory
                        Plot posterior pupil trajectories or condition
                        differences
plot_pupil_ppc          Plot pupil posterior-predictive evidence
plot_pupil_predictive_calibration
                        Plot posterior predictive calibration
plot_pupil_readiness    Plot pupil readiness evidence
plot_pupil_residual_acf
                        Plot pupil residual autocorrelation
plot_pupil_residual_scale
                        Plot posterior residual scale over time
plot_pupil_residual_spectrum
                        Plot residual spectrum
plot_pupil_response_parameters
                        Plot experimental nonlinear response parameters
plot_pupil_sensitivity
                        Plot pupil sensitivity scenarios or result
                        comparisons
plot_pupil_temporal_dependence
                        Plot empirical temporal-dependence audit
plot_pupil_trajectory_derivative
                        Plot posterior pupil trajectory derivative
plot_pupil_validation   Plot pupil validation evidence
plot_random_intercept_variance_partition
                        Plot Random-Intercept Variance Partition
plot_random_slope_sensitivity
                        Plot Random-Slope Sensitivity
plot_rank_diagnostics   Rank-Diagnostic Plot
plot_recovery_bias      Plot Recovery Standardized Bias
plot_recovery_coverage
                        Plot Recovery Coverage
plot_recovery_estimates
                        Plot Repetition-Level Recovery Estimates
plot_recovery_fit_status
                        Plot Recovery Fit Status
plot_recovery_rmse      Plot Recovery RMSE
plot_reporting_checklist
                        Plot a Reporting Checklist
plot_sampler_diagnostics
                        Sampler-Diagnostic Plot
plot_sampling_diagnostics
                        Plot Sampling Diagnostics
plot_sbc_coverage_gg    SBC Coverage Plot
plot_sbc_ecdf_gg        SBC ECDF-Difference Plot
plot_sbc_rank_gg        SBC Rank-Histogram Plot
plot_sbc_simulated_vs_estimated_gg
                        SBC Simulated-versus-Estimated Plot
plot_schema_comparison_gg
                        Plot Schema Differences with ggplot2
plot_sensitivity_suite_gg
                        Plot a Sensitivity Suite with ggplot2
plot_uncertainty_decomposition
                        Prediction-Uncertainty Plot
plot_variance_components
                        Variance-Component Plot
posterior_correlation_table
                        Posterior Correlation Table
posterior_interval_table
                        Posterior Interval Table
posterior_predictive_statistic
                        Posterior Predictive Statistic Check
posterior_predictive_summary_table
                        Posterior Predictive Summary Table
posterior_probability_table
                        Posterior Direction and ROPE Probability Table
powerscale_sensitivity_table
                        Power-Scale Sensitivity Table
powerscale_sequence_for_fit
                        Create a Power-Scaling Sequence
ppc_statistic_table     Posterior Predictive Statistic Table
predict_advanced_pupil_trajectory
                        Predict an advanced pupil trajectory
predict_binary_probability
                        Binary Event-Probability Predictions
predict_duration        Duration Predictions
predict_model           Posterior Prediction for Approved gp3bayes
                        Models
predict_pupil_trajectory
                        Predict governed pupil trajectories
prediction_contrast     Posterior Prediction Contrast
prediction_contrast_profile_table
                        Prediction Contrast Profile Table
prediction_draws_long   Convert Prediction Draws to Long Form
prediction_exceedance_probability
                        Posterior Exceedance Probabilities
prediction_gradient_table
                        Prediction-Profile Gradient Table
prediction_interval_width
                        Prediction Interval Width Table
prediction_pairwise_contrasts
                        Pairwise Prediction Contrasts
prediction_profile_table
                        Prediction Profile Table
prediction_rank_probabilities
                        Posterior Ranking Probabilities for Prediction
                        Rows
prediction_score_uncertainty
                        Posterior Uncertainty in Prediction Scores
prediction_score_uncertainty_table
                        Prediction Score-Uncertainty Table
prediction_support_table
                        Prediction-Support Table
prediction_surface_table
                        Prediction Surface Table
prediction_table        Prediction Summary Table
prediction_uncertainty_decomposition
                        Decompose Prediction Uncertainty Descriptively
predictive_coverage_table
                        Posterior Predictive Coverage Table
predictive_distribution_atlas_table
                        Predictive Distribution Atlas Table
predictive_quantile_envelope
                        Posterior-Predictive Quantile Envelope
predictive_residuals    Posterior Predictive Residuals
preflight_model_specification
                        Preflight an Approved Model Specification
prepare_binocular_pupil_timecourse
                        Prepare binocular pupil data without averaging
                        eyes
prepare_hierarchical_binary_data
                        Prepare Hierarchical Binary Data
prepare_hierarchical_duration_data
                        Prepare Hierarchical Duration Data
prepare_pupil_timecourse
                        Prepare a pupil time course under explicit
                        transformations
prior_posterior_bridge
                        Create a Declared-Prior versus Posterior Bridge
prior_posterior_distance_table
                        Prior-versus-Posterior Distance Table
prior_posterior_draws_long
                        Long Prior and Posterior Draw Table
prior_posterior_summary_table
                        Prior-versus-Posterior Summary Table
prior_sensitivity_scenario_table
                        Prior Sensitivity Scenario Table
prior_sensitivity_table
                        Prior Sensitivity Table
prior_specification_table
                        Prior-Specification Table
publication_registry_table
                        Publication Registry Table
pupil_advanced_capabilities
                        Report the gp3bayes 0.5 advanced-pupillometry
                        capability boundary
pupil_advanced_compatibility_table
                        Report governed compatibility rules for 0.5
                        advanced models
pupil_advanced_mapping_table
                        Inspect the resolved 0.5 pupil column mapping
pupil_advanced_specification_table
                        Tabulate an advanced pupil model specification
pupil_autocorrelation_table
                        Tabulate a temporal-dependence audit
pupil_binocular_agreement_table
                        Summarise binocular posterior agreement
pupil_binocular_correlation
                        Extract posterior residual binocular
                        correlation
pupil_binocular_difference
                        Estimate posterior right-minus-left binocular
                        differences
pupil_condition_contrast
                        Estimate a posterior condition-difference
                        trajectory
pupil_distribution_table
                        Tabulate a pupil distribution declaration or
                        advanced specification
pupil_dynamic_contrast_table
                        Tabulate a dynamic pupil contrast
pupil_gp_hyperparameters
                        Extract Gaussian-process hyperparameters
pupil_gp_table          Tabulate GP hyperparameters
pupil_identifiability_table
                        Tabulate advanced pupil
                        identifiability/design-support audit
pupil_measurement_audit_table
                        Extract a pupil measurement-context table
pupil_measurement_uncertainty_table
                        Summarise measurement uncertainty declared in a
                        model
pupil_missingness_table
                        Tabulate missingness audit results
pupil_model_card        Build an auditable advanced pupil model card
pupil_model_card_table
                        Tabulate a pupil model card
pupil_model_comparison_table
                        Tabulate model comparison
pupil_model_weights     Compute explicit predictive model weights
pupil_ppc_table         Extract pupil PPC evidence tables
pupil_readiness_table   Extract pupil readiness tables
pupil_residual_acf      Summarise residual autocorrelation for a pupil
                        fit
pupil_residual_scale_table
                        Tabulate posterior residual scale
pupil_residual_spectrum
                        Compute a descriptive residual spectrum
pupil_response_parameter_table
                        Tabulate nonlinear response parameters
pupil_sensitivity_table
                        Extract pupil sensitivity scenarios or
                        comparison results
pupil_specification_table
                        Convert a pupil specification to a
                        publication-ready table
pupil_trajectory_derivative_table
                        Tabulate posterior pupil trajectory derivatives
pupil_trajectory_table
                        Convert a pupil trajectory to a table
pupil_validation_table
                        Extract a pupil validation table
random_intercept_variance_partition
                        Random-Intercept Latent Variance Partition
random_intercept_variance_partition_table
                        Random-Intercept Variance-Partition Table
random_slope_sensitivity_table
                        Random-Slope Sensitivity Table
read_analysis_manifest
                        Read a Frozen Analysis Manifest
read_gp3bayes_schema    Read a Frozen gp3bayes Object Schema
recovery_estimate_table
                        Recovery Estimate Table
recovery_fit_status_table
                        Recovery Fit-Status Table
recovery_parameter_table
                        Recovery Parameter Summary Table
register_publication_figure
                        Register a Publication Figure
register_publication_table
                        Register a Publication Table
review_duration_extremes
                        Review Extreme Positive Durations Without
                        Deleting Them
run_binary_recovery     Run Binary Parameter Recovery
run_duration_recovery   Run Duration Parameter Recovery
run_group_deletion_sensitivity
                        Run a Group-Deletion Sensitivity Plan
run_random_slope_sensitivity
                        Run Random-Intercept versus Random-Slope
                        Sensitivity
run_sbc_plan            Run a Simulation-Based Calibration Plan
run_sensitivity_suite   Run a Unified Sensitivity Suite
sampler_diagnostic_table
                        Summarise NUTS Sampler Diagnostics
save_figure_set         Save a Figure Set
save_publication_registry_figures
                        Save Publication Registry Figures
sbc_overview_table      SBC Overview Table
sbc_stats_table         SBC Statistics Table
schema_comparison_table
                        Schema-Comparison Table
score_pupil_predictions
                        Score posterior predictive draws against
                        observed pupil values
sensitivity_suite_table
                        Sensitivity-Suite Table
simulate_advanced_pupil_timecourse
                        Simulate advanced dynamic pupil time courses
simulate_binary_pathology
                        Simulate a Dedicated Binary Pathology Scenario
simulate_binocular_pupil_timecourse
                        Simulate joint binocular pupil traces
simulate_declared_prior_draws
                        Simulate Marginal Draws from Declared gp3bayes
                        Priors
simulate_duration_pathology
                        Simulate a Dedicated Duration Pathology
                        Scenario
simulate_hierarchical_binary_data
                        Simulate Hierarchical Binary Data
simulate_hierarchical_duration_data
                        Simulate Hierarchical Lognormal Duration Data
simulate_pupil_response_shape
                        Simulate data from the experimental nonlinear
                        response-shape family
simulate_pupil_timecourse
                        Simulate deterministic hierarchical pupil time
                        courses
specify_advanced_pupil_timecourse_model
                        Specify an advanced governed pupil time-course
                        model
specify_binary_model    Specify a Backend-Independent Binary Model
specify_binary_model_with_interaction_prior
                        Specify a Binary Model with a Separate
                        Interaction Prior
specify_binocular_pupil_model
                        Specify a joint binocular pupil model
specify_duration_model
                        Specify a Backend-Independent Duration Model
specify_duration_model_with_interaction_prior
                        Specify a Duration Model with a Separate
                        Interaction Prior
specify_pupil_distribution
                        Declare an advanced pupil observation
                        distribution
specify_pupil_response_shape_model
                        Specify the experimental nonlinear pupil
                        response-shape model
specify_pupil_timecourse_model
                        Specify the restricted hierarchical pupil
                        time-course model
summarise_binary_group_variation
                        Summarise Binary Outcome Variation Within
                        Groups
summarise_binary_posterior
                        Summarise a Binary Posterior
summarise_condition_balance
                        Summarise Overall Condition Balance
summarise_duration_posterior
                        Summarise a Duration Posterior
summarise_estimand_draws
                        Summarise Posterior Estimand Draws
summarise_mcmc_quality
                        Summarise MCMC Quality Evidence
summarise_model_posterior
                        Summarise an Approved gp3bayes Posterior
summarise_pupil_posterior
                        Summarise a fitted pupil posterior
summarise_sbc_result    Summarise an SBC Result
summarise_sensitivity_suite
                        Summarise a Sensitivity Suite
theme_gp3bayes          gp3bayes Publication Theme
translate_advanced_pupil_model_to_brms
                        Translate an advanced pupil model to brms
                        without fitting
translate_binary_model_to_brms
                        Translate a Binary Model Specification to brms
translate_binary_model_with_interaction_prior
                        Translate an Advanced Binary Specification to
                        brms
translate_binocular_pupil_model_to_brms
                        Translate a binocular specification to a brms
                        multivariate formula
translate_duration_model_to_brms
                        Translate a Duration Model Specification to
                        brms
translate_duration_model_with_interaction_prior
                        Translate an Advanced Duration Specification to
                        brms
translate_pupil_model_to_brms
                        Translate an approved pupil model to brms
translate_pupil_response_shape_to_brms
                        Translate the experimental response-shape model
                        to brms
validate_analysis_manifest
                        Validate an Analysis Manifest
validate_backend_environment
                        Validate a Bayesian Backend Environment
validate_gp3bayes_object
                        Validate a gp3bayes Object
validate_gp3bayes_schema
                        Validate an Object Against a Frozen gp3bayes
                        Schema
validate_prior_specification
                        Validate a Prior Specification
validate_publication_registry
                        Validate a Publication Registry
validate_pupil_leave_future_out
                        Execute or materialize leave-future-out
                        validation
validate_pupil_model    Validate a pupil model for an explicit
                        prediction target
validate_transformation_replay
                        Validate Exact Transformation Replay
variance_component_table
                        Variance-Component Posterior Table
write_analysis_bundle_report
                        Write an Analysis-Bundle Markdown Report
write_diagnostic_dashboard_report
                        Write a Diagnostic Dashboard Report
write_model_card        Write a Model Card
write_publication_registry
                        Write a Publication Registry
write_reproducibility_report
                        Write a Reproducibility Report
