F                       Inbreeding coefficient
Fa                      Ancestral inbreeding coefficient
Fij_core                Partial inbreeding coefficient (core function)
Fij_core_i_cpp          Partial inbreeding coefficient (core function)
Ne_delta                Realized effective population size (mean)
ancestors               Individuals to be evaluated in purging analyses
arrui                   Arrui pedigree
atlas                   Cuvier's gazelle pedigree
check_B                 Check B
check_F                 Check inbreeding coefficient
check_Fcol              Check columns with inbreeding values
check_Ne                Check Ne
check_ancestors         Check ancestor individuals
check_basic             Check basic
check_bool              Check if a variable is boolean or not
check_col               Check that optional column is included
check_d                 Check purging coefficient
check_df                Check pedigree class
check_h                 Check dominance degree
check_index             Check individual index
check_int               Check if a variable is a positive integer or
                        not
check_length            Check if a variable has length >1
check_na                Check if a vector contains NA values
check_names             Check that mandatory column names are included
check_not_col           Check if optional column is included
check_nrows             Check observed and expected number of rows
check_null              Check if a value is NULL
check_order             Check individual order
check_reference         Check columns with reference individuals
check_repeat_id         Check repeated ids
check_s                 Check selection coefficient
check_tcol              Check columns with generation numbers
check_types             Check that mandatory column names are of type
                        int
check_u                 Check u
check_zero_id           Check individuals named zero
dama                    Dama gazelle pedigree
darwin                  Darwin/Wedgwood pedigree
delta_Fi                Individual inbreeding variation
dorcas                  Dorcas gazelle pedigree
exp_F                   Expected inbreeding coefficient
exp_Fa                  Expected ancestral inbreeding coefficient
exp_g                   Expected purged inbreeding coefficient
g                       Purged inbreeding coefficient
hwd                     Deviation from Hardy-Weinberg equilibrium
idx_ancestors           Index ancestors
ip_F                    Inbreeding coefficient
ip_Fa                   Ancestral inbreeding coefficient
ip_Fij                  Partial inbreeding coefficient
ip_g                    Purged inbreeding coefficient
ip_op                   Opportunity of purging
map_ancestors           Map ancestors
op                      Opportunity of purging
ped_clean               Remove individuals not used for purging
                        analyses
ped_graph               Input for igraph
ped_maternal            Maternal effects
ped_rename              Rename individuals in a pedigree from 1 to N
ped_sort                Sort individuals (with ancestors on top of
                        descendants)
ped_sort_i              Sorting steps
pop_Nancestors          Population founders and ancestors
pop_Ne                  Effective population size
pop_hwd                 Deviation from Hardy-Weinberg equilibrium
pop_t                   Number of equivalent complete generations
purgeR                  purgeR: Estimation of inbreeding-purging
                        genetic parameters in pedigreed populations
reproductive_value      Reproductive value
sample_allele           Sample dam or sire inherited allele
search_ancestors        Search and individuals' ancestors
w_grandoffspring        Grandoffspring
w_offspring             Offspring
w_reproductive_value    Reproductive value
