identifier,genus,species,subspecies,kcat_val,kcat_T,Kc_val,Kc_T,Ko_val,Ko_T,S_val,S_T,temp,form,PGS,taxonomy,group,note,short_ref
biuncialis_Prins_2016,Aegilops,biuncialis,,3.2,,16.8,,470,,96.3,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
comosa_Prins_2016,Aegilops,comosa,,2.86,,13.5,,360,,106,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
cylindrica_Prins_2016,Aegilops,cylindrica,,3.68,,13.7,,451,,109,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
juvenalis_Prins_2016,Aegilops,juvenalis,,3.25,,20.6,,492,,90.4,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
speltoides_Prins_2016,Aegilops,speltoides,,3.24,,16.5,,447,,102,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
tauschii_Prins_2016,Aegilops,tauschii,,2.86,,14.9,,495,,107,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
triuncialis_Prins_2016,Aegilops,triuncialis,,2.62,,12.8,,380,,103,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
uniaristata_Prins_2016,Aegilops,uniaristata,,2.7,,13.8,,450,,102,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
vavilovii_Prins_2016,Aegilops,vavilovii,,3.32,,13.3,,363,,109,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
squarrosum_Orr_2016,Agriophyllum,squarrosum,,2.8,,15.4,,339,,93.9,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
scabra_Orr_2016,Agrostis,scabra,,3.6,,22,,653,,103,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
stolonifera_Orr_2016,Agrostis,stolonifera,,5.2,,25.3,,802,,105,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
vinosum_Jordan_1985,Allochromatium,vinosum,,6.7,,37,,290,,41,,25,1Aq,,Gammaproteobacteria,Bacteria,"crude extract combo of both carboxylases, potentially, but 1Ac is expressed in low concentrations so assuming it's 1Aq",Jordan 1985
caudatus_Kubien_2008,Amaranthus,caudatus,,4.14,,18.2,,289,,77.5,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
bracteata_Orr_2016,Amphicarpaea,bracteata,,4,,29,,693,,97.5,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
variabilis_Badger_1980,Anabaena,variabilis,,2.6931,,293,,1080,,33.3,,25,1Bc,canon,Cyanobacteria,Bacteria,Reported kcat_C&_O as specific activity; S reported in Tcherkez+ 2006 as 43 due to adjustment to pKa of 6.25 from 6.36,Badger 1980
fulgidus_Kreel_2015,Archaeoglobus,fulgidus,,23.1,,51,,5,,4,,83,3,alt,Archaea,Archaea,"Points to Kreel & Tabita 2007, but no pKa given there either - calculated from Lange's handbook of Chemistry (13th edition). KC determined anaerobically. Fulgidus WT values almost identical to 2007 paper - Table indicates that they are copied.",Kreel 2015
latifolia_Orr_2016,Arctagrostis,latifolia,,5.8,,21,,497,,105,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
myriantha_Orr_2016,Artemisia,myriantha,,3.1,,26.4,,844,,110,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
artemisia_vulgaris_Orr_2016,Artemisia,vulgaris,,3.9,,31.9,,626,,105,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
glabriuscula_Badger_&_Collatz_1977,Atriplex,glabriuscula,,32.6,,48,,499,,59.9830383480826,,35,1B,canon,C3 plants,Plants,"KM values are probably fine, but unclear how they converted from vmax to kcat. PMID 24675672 says this one is C3. S calculated with kcat,O reported in study; pKa calculated using formula from Umreit book (6.317 at 38C, increases .005/C from 20 to 40C, increases .006 between 10 and 20C, increases .010 between 0 and 10C)",Badger & Collatz 1977
avena_sativa_Hermida-Carrera_2016,Avena,sativa,Forridena,2.3,,10.8,,382,,99.9,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
bathyomphala_Valegård_2018,Bacterosira,bathyomphala,,4.543,,81,,1300,,87,,25,1D,canon,Diatoms,Algae,pH from Carmo-Silva et al. 2010,Valegård 2018
beta_vulgaris_Hermida-Carrera_2016,Beta,vulgaris,Detroit,2,,10.8,,357,,101,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
beta_vulgaris_Orr_2016,Beta,vulgaris,vulgaris,3.8,,17,,401,,97.8,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0.",Orr 2016
distachyon_Prins_2016,Brachypodium,distachyon,,2.05,,11.9,,396,,111,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
brassica_oleracea_Hermida-Carrera_2016,Brassica,oleracea,var italica,2.1,,11.8,,411,,96.2,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
anomalus_Orr_2016,Bromus,anomalus,,2.9,,16.9,,494,,101,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
arundinacea_Orr_2016,Calamagrostis,arundinacea,,4.1,,22.7,,614,,104,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
calamagrostis_canescens_Orr_2016,Calamagrostis,canescens,,2.5,,15.2,,594,,98.5,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
foliosa_Orr_2016,Calamagrostis,foliosa,,3.5,,20.9,,330,,105,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
inexpansa_Orr_2016,Calamagrostis,inexpansa,,3.3,,18.8,,608,,111,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
nutkaensis_Orr_2016,Calamagrostis,nutkaensis,,3.1,,20.1,,601,,109,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
annuum_Hermida-Carrera_2016,Capsicum,annuum,Picante,1.9,,9.6,,243,,96,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
ciliaris_Sharwood_2016b,Cenchrus,ciliaris,,6,,19,,470,,69.9,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
calcitrans_CCMP1315_Young_2016,Chaetoceros,calcitrans,CCMP1315,2.6,,25,,413,,57,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
calcitrans_CS178_Young_2016,Chaetoceros,calcitrans,CS-178,3.4,,31,,490,,75,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
muelleri_Young_2016,Chaetoceros,muelleri,CCMP1316,2.4,,23,,425,,96,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
album_Kubien_2008,Chenopodium,album,,2.91,,11.2,,415,,78.7,,25,1B,canon,C3 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
murale_Orr_2016,Chenopodium,murale,,4.4,,23.8,,354,,109,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
petiolare_Orr_2016,Chenopodium,petiolare,,4.4,,25.6,,589,,98.5,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
reinhardtii_Du_and_Spreitzer_2000,Chlamydomonas,reinhardtii,,2.655,,32,,559,,63,,25,1B,canon,Green algae,Algae,Cite Jordan & Ogren 1981 so used that pKa & pH; kcat converted from specific activity in umol/h/mg using .0191 conversion factor,Du and Spreitzer 2000
reinhardtii_Genkov_and_Spreitzer_2009,Chlamydomonas,reinhardtii,,2.427,,31,,527,,60,,25,1B,canon,Green algae,Algae,pH & pKa same as Chen 1988 since they cite that for methods,Genkov and Spreitzer 2009
reinhardtii_Iñiguez_2021,Chlamydomonas,reinhardtii,,2.3,,30.9,,485,,66.1,,25,1B,canon,Green algae,Algae,methodology-corrected average from Iñiguez et al. 2021 across multiple strains,Iñiguez 2021
reinhardtii_Satagopan_and_Spreitzer_2008,Chlamydomonas,reinhardtii,,2.274,,34,,417,,61,,25,1B,canon,Green algae,Algae,,Satagopan and Spreitzer 2008
indicum_Orr_2016,Chrysanthellum,indicum,afroamericanum,4.7,,28.1,,598,,82.4,,25,1B,canon,C4 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
ecirrhosus_Orr_2016,Citrullus,ecirrhosus,,3.1,,18.9,,544,,99.9,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
lanatus_Orr_2016,Citrullus,lanatus,lanatus,2.5,,19.4,,510,,107,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
arabica_Hermida-Carrera_2016,Coffea,arabica,Catuai Vermelho IAC 44,2.1,,11,,238,,98.7,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
maxima_Hermida-Carrera_2016,Cucurbita,maxima,Totanera,2.2,,9,,228,,98.4,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
fusiformis_Read_1994,Cylindrotheca,fusiformis,,1.95,,36,,568,,111,,25,1D,canon,Diatoms,Algae,,Read 1994
cylindrotheca_sp_Read_1992b,Cylindrotheca,sp,N1,0.97,,33,,631,,107.1,,25,1D,canon,Diatoms,Algae,,Read 1992b
cylindrotheca_sp_Read_1994,Cylindrotheca,sp,N1,0.78,,31,,1290,,106,,25,1D,canon,Diatoms,Algae,,Read 1994
dactylon_Carmo-Silva_2010,Cynodon,dactylon,,4,,21,,402,,89.2,,25,1B,canon,C4 plants,Plants,,Carmo-Silva 2010
danthonioides_Orr_2016,Deschampsia,danthonioides,,4.5,,22.3,,580,,108,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
cinereum_Orr_2016,Desmodium,cinereum,,3,,12.8,,403,,97.5,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
intortum_Orr_2016,Desmodium,intortum,,3.3,,14.2,,394,,98.7,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
psilocarpum_Orr_2016,Desmodium,psilocarpum,,3.6,,15.6,,452,,95.9,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
farctus_Orr_2016,Elymus,farctus,,3.3,,19.5,,300,,106,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
tef_Orr_2016,Eragrostis,tef,,7.1,,34.9,,640,,89,,25,1B,canon,C4 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
flabelliformis_Orr_2016,Erythrina,flabelliformis,,3.6,,18.4,,665,,96.4,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
globulus_Sharwood_2017,Eucalyptus,globulus,,3,,9.8,,220,,80.4,,25,1B,canon,C3 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2017
helioscopia_Orr_2016,Euphorbia,helioscopia,,1.9,,11.5,,453,,96.8,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
microsphaera_Orr_2016,Euphorbia,microsphaera,,4.5,,25.8,,546,,99.7,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
gigantea_Orr_2016,Festuca,gigantea,,5.1,,31.2,,595,,108,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
pratensis_Orr_2016,Festuca,pratensis,,5.1,,23.1,,686,,106,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
anomala_Kubien_2008,Flaveria,anomala,,3.8,,10.7,,605,,77.9,,25,1B,canon,C3-C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
australasica_Kubien_2008,Flaveria,australasica,,3.84,,22,,309,,77.2,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
bidentis_Kubien_2008,Flaveria,bidentis,,4.16,,20.2,,639,,75.5,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
bidentis_Whitney_2011b,Flaveria,bidentis,,4.8,,20.4,,420,,81,,25,1B,canon,C4 plants,Plants,,Whitney 2011
brownii_Kubien_2008,Flaveria,brownii,,2.58,,12.8,,378,,83.8,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed; C4-like,Kubien 2008
chloraefolia_Kubien_2008,Flaveria,chloraefolia,,3.35,,12.4,,740,,81.6,,25,1B,canon,C3-C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
cronquistii_Kubien_2008,Flaveria,cronquistii,,3.13,,10.8,,653,,81,,25,1B,canon,C3 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
floridana_Kubien_2008,Flaveria,floridana,,3.19,,13.2,,686,,84.5,,25,1B,canon,C3-C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
floridana_Whitney_2011b,Flaveria,floridana,,3.6,,14.4,,374,,82,,25,1B,canon,C3-C4 plants,Plants,,Whitney 2011
kochiana_Kubien_2008,Flaveria,kochiana,,3.68,,22.7,,150,,77,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
linearis_Kubien_2008,Flaveria,linearis,,3.43,,12.5,,415,,78.1,,25,1B,canon,C3-C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
palmeri_Kubien_2008,Flaveria,palmeri,,3.54,,13.5,,193,,83.8,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed; C4-like,Kubien 2008
pringlei_Kubien_2008,Flaveria,pringlei,,3.11,,12,,666,,80.8,,25,1B,canon,C3 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
pringlei_Whitney_2011b,Flaveria,pringlei,,3.5,,13.7,,376,,81,,25,1B,canon,C3 plants,Plants,,Whitney 2011
pringlei_Zhu_1998,Flaveria,pringlei,,2.1,,12,,880,,102,,25,1B,canon,C3 plants,Plants,"Very light on details, pH could be wrong for kcat",Zhu 1998
ramosissima_Kubien_2008,Flaveria,ramosissima,,2.77,,12,,722,,79.8,,25,1B,canon,C3-C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
sonorensis_Kubien_2008,Flaveria,sonorensis,,2.69,,10.2,,785,,84.3,,25,1B,canon,C3-C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
trinervia_Kubien_2008,Flaveria,trinervia,,4.42,,17.9,,671,,77,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
vaginata_Kubien_2008,Flaveria,vaginata,,3.78,,21.4,,880,,78.7,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed; C4-like,Kubien 2008
suffruticosa_Orr_2016,Flueggea,suffruticosa,,3.4,,19.2,,547,,101,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
vulgare_Orr_2016,Foeniculum,vulgare,,4.4,,20.7,,512,,94.3,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
cylindrus_Young_2016,Fragilariopsis,cylindrus,CCMP1102,3.5,,64,,667,,77,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
sulphuraria_Whitney_2001,Galdieria,sulphuraria,,1.2,,3.3,,374,,166,,25,1D,canon,Red algae,Algae,pKa not needed for Sc/o; assumed 6.25 for pKa as Whitney papers have been using that value since 1999,Whitney 2001
glycine_canescens_Orr_2016,Glycine,canescens,,2.6,,17.2,,587,,97.1,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
max_Hermida-Carrera_2016,Glycine,max,Ransom,1.5,,8.6,,292,,97,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
max_Orr_2016,Glycine,max,,2.5,,13.2,,660,,99.6,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
brachyantherum_Orr_2016,Hordeum,brachyantherum,,2.9,,16.2,,371,,101,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
murinum_Orr_2016,Hordeum,murinum,,4.2,,21.5,,511,,100,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
vulgare_Hermida-Carrera_2016,Hordeum,vulgare,vulgare,2.4,,9,,394,,99.2,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
vulgare_Prins_2016,Hordeum,vulgare,Lenins,3.99,,15.2,,465,,102,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
batatas_Hermida-Carrera_2016,Ipomoea,batatas,Rosa de Malaga,2.5,,12,,340,,98.5,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
purpureus_Orr_2016,Lablab,purpureus,,5.3,,21.7,,556,,91.1,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
lactuca_sativa_Hermida-Carrera_2016,Lactuca,sativa,Cogollo de Tudela,2.2,,11.1,,403,,94,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
campestre_Orr_2016,Lepidium,campestre,,3.4,,15.8,,336,,92.8,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
antonii-llorensii_Galmés_2014a,Limonium,antonii-llorensii,,2.4,,8.7,,397,,112,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
artruchium_Galmés_2014a,Limonium,artruchium,,3,,9.4,,321,,113,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
balearicum_Galmés_2014a,Limonium,balearicum,,3.6,,9.7,,346,,103,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
barceloi_Galmés_2014a,Limonium,barceloi,,3.4,,9.3,,346,,106,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
biflorum_Galmés_2014a,Limonium,biflorum,,2.4,,8,,316,,112,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
companyonis_Galmés_2014a,Limonium,companyonis,,3.3,,8.9,,429,,112,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
echioides_Galmés_2014a,Limonium,echioides,,3.9,,10.7,,427,,106,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
ejulabilis_Galmés_2014a,Limonium,ejulabilis,,2,,7.6,,415,,116,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
gibertii_Galmés_2014a,Limonium,gibertii,,2.5,,9.1,,431,,112,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
grosii_Galmés_2014a,Limonium,grosii,,2.9,,8.1,,328,,113,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
gymnesicum_Galmés_2014a,Limonium,gymnesicum,,2.4,,8.2,,388,,121,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
leonardi-llorensii_Galmés_2014a,Limonium,leonardi-llorensii,,2.8,,8.8,,438,,110,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
magallufianum_Galmés_2014a,Limonium,magallufianum,,2.6,,7,,297,,111,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
retusum_Galmés_2014a,Limonium,retusum,,2.1,,7.1,,396,,121,,25,1B,canon,C3 plants,Plants,"Cites Parry 2007 for S measurement, no pKa reported -> pKa from other Galmes 2014 paper",Galmés 2014a
multiflorum_Orr_2016,Lolium,multiflorum,,4.5,,29.1,,740,,99.9,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
rigidum_Orr_2016,Lolium,rigidum,,4.7,,25,,520,,100,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
uniflorum_Orr_2016,Macrotyloma,uniflorum,,4.4,,25.2,,519,,101,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
esculenta_Hermida-Carrera_2016,Manihot,esculenta,,1.4,,6.1,,335,,101,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
esculenta_Orr_2016,Manihot,esculenta,,2.4,,15,,566,,105,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
medicago_sativa_Hermida-Carrera_2016,Medicago,sativa,Aragon,1.7,,9.7,,373,,95.6,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
maximus_Sharwood_2016b,Megathyrsus,maximus,,5.3,,13.9,,265,,80.3,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
annua_Orr_2016,Mercurialis,annua,,3.4,,17,,417,,95.7,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
burtonii_Alonso_2009,Methanococcoides,burtonii,,2,,130,,3,,1.18,,25,2_3,alt,Archaea,Archaea,L10 induced by addition of RuBP; Sc/o uses Kane method so no pKa correction necessary,Alonso 2009
burtonii_Wilson_2016,Methanococcoides,burtonii,,0.6,,56.9,,11,,1.3,,25,2_3,alt,Archaea,Archaea,Methods from Whitney & Sharwood 2007; pKa not needed for Sc/o,Wilson 2016
velutina_Orr_2016,Musa,velutina,,3.2,,19,,564,,111,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
tabacum_Iñiguez_2021,Nicotiana,tabacum,,2.4,,10.9,,382,,83.5,,25,1B,canon,C3 plants,Plants,methodology-corrected average from Iñiguez et al. 2021 across multiple cultivars,Iñiguez 2021
tabacum_Occhialini_2015,Nicotiana,tabacum,,3.9,,9,,292,,91.2,,25,1B,canon,C3 plants,Plants,"Assays in tobacco leaf tissue homogeonate; only cites CO2 concentration, not pKa used for citation. I think it's impossible to determine it from what's given in the paper.",Occhialini 2015
tabacum_Orr_2016,Nicotiana,tabacum,PH,4.4,,21.2,,452,,96.4,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
tabacum_Sharwood_2016b,Nicotiana,tabacum,,3.1,,9.7,,283,,82.6,,25,1B,canon,C3 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
tabacum_Sharwood_2017,Nicotiana,tabacum,,3.1,,9.4,,236,,82.3,,25,1B,canon,C3 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2017
tabacum_Whitney_2001,Nicotiana,tabacum,,3.4,,10.7,,295,,82,,25,1B,canon,C3 plants,Plants,pKa not needed for Sc/o; assumed 6.25 for pKa as Whitney papers have been using that value since 1999,Whitney 2001
tabacum_Whitney_2011b,Nicotiana,tabacum,,3.2,,12.6,,274,,81,,25,1B,canon,C3 plants,Plants,,Whitney 2011
tabacum_Young_2016,Nicotiana,tabacum,,3.1,,9.7,,283,,82,,25,1B,canon,C3 plants,Plants,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
luteus_Read_1994,Olisthodiscus,luteus,,0.83,,59,,692,,100,,25,1D,canon,Brown algae,Algae,,Read 1994
barthii/glaberrima_Orr_2016,Oryza,barthii/glaberrima,,2.5,,14,,479,,107,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
eichingeri_Orr_2016,Oryza,eichingeri,,2.5,,14.1,,612,,107,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
glaberrima_Orr_2016,Oryza,glaberrima,WAB 1939,2.7,,14.9,,586,,105,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
glumaepatula_Orr_2016,Oryza,glumaepatula,,2.4,,15.2,,484,,109,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
longistaminata_Orr_2016,Oryza,longistaminata,,2.2,,15.1,,757,,108,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
meridionalis_Orr_2016,Oryza,meridionalis,,2.6,,14.6,,382,,107,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
nivara_Orr_2016,Oryza,nivara,,2.7,,15.6,,611,,107,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
punctata_Orr_2016,Oryza,punctata,,2.7,,14.9,,342,,109,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
oryza_sativa_Hermida-Carrera_2016,Oryza,sativa,Bomba,2.1,,8,,222,,93.1,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
sativa_Makino_1988,Oryza,sativa,,2.001,,8,,335,,127.7,,25,1B,canon,C3 plants,Plants,S calculated from Vo given,Makino 1988
sativa_indica_Orr_2016,Oryza,sativa,Indica,2.2,,7,,269,,101,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
sativa_japonica_Orr_2016,Oryza,sativa,Japonica,2.8,,11.8,,469,,106,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
rubra_Orr_2016,Oxybasis,rubra,,4.1,,14.5,,346,,97.8,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
amarum_Orr_2016,Panicum,amarum,,3.2,,33.1,,800,,89.5,,25,1B,canon,C4 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
bisulcatum_Sharwood_2016b,Panicum,bisulcatum,,2.6,,7.8,,416,,87.7,,25,1B,canon,C3 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
coloratum_Sharwood_2016b,Panicum,coloratum,,3.4,,11.1,,445,,84.8,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
deustum_Sharwood_2016b,Panicum,deustum,,5,,15.4,,306,,84.8,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
dichotomiflorum_Orr_2016,Panicum,dichotomiflorum,,3.1,,36.3,,1540,,92.6,,25,1B,canon,C4 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
miliaceum_Sharwood_2016b,Panicum,miliaceum,,2.1,,7.2,,313,,79.9,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
milioides_Sharwood_2016b,Panicum,milioides,,2.2,,7.4,,387,,92.3,,25,1B,canon,C3-C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
monticola_Sharwood_2016b,Panicum,monticola,K1,5.3,,18.2,,543,,79.4,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
phragmitoides_Orr_2016,Panicum,phragmitoides,,2.8,,25.1,,687,,107,,25,1B,canon,C4 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
virgatum_Sharwood_2016b,Panicum,virgatum,,3.3,,12.7,,271,,82.6,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
dilatatum_Carmo-Silva_2010,Paspalum,dilatatum,,3.6,,19.9,,415,,88,,25,1B,canon,C4 plants,Plants,,Carmo-Silva 2010
lutheri_Heureux_2017,Pavlova,lutheri,,2.5,,14.5,,1150,,125,,25,1D,canon,Haptophytes,Algae,"Methods same as Sharwood 2016 - assuming pH reported there for 25 C. Uses 2 pKa model, not clear if correction should apply",Heureux 2017
tricornutum_Whitney_2001,Phaeodactylum,tricornutum,,3.4,,27.9,,467,,113,,25,1D,canon,Diatoms,Algae,pKa not needed for Sc/o; assumed 6.25 for pKa as Whitney papers have been using that value since 1999,Whitney 2001
tricornutum_CS_29_Young_2016,Phaeodactylum,tricornutum,CS-29,3.3,,41,,664,,116,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
tricornutum_UTEX_642_Young_2016,Phaeodactylum,tricornutum,UTEX 642,3.2,,36,,592,,108,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
carteri_Orr_2016,Phaseolus,carteri,,3.2,,14.2,,422,,84.5,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
coccineus_Orr_2016,Phaseolus,coccineus,,3.9,,15.6,,491,,104,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
lunatus_Orr_2016,Phaseolus,lunatus,,3.2,,17.3,,537,,101,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
phaseolus_vulgaris_Hermida-Carrera_2016,Phaseolus,vulgaris,Contender,1.7,,7.8,,325,,99.7,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
phaseolus_vulgaris_Orr_2016,Phaseolus,vulgaris,,3.5,,20.2,,463,,105,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
carterae_Heureux_2017,Pleurochrysis,carterae,,3.3,,17.7,,366,,102,,25,1D,canon,Haptophytes,Algae,"Methods same as Sharwood 2016 - assuming pH reported there for 25 C. Uses 2 pKa model, not clear if correction should apply. ",Heureux 2017
palustris_Orr_2016,Poa,palustris,,4.2,,19.2,,562,,112,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
cruentum_Read_1994,Porphyridium,cruentum,,1.59,,22,,1570,,129,,25,1D,canon,Red algae,Algae,,Read 1994
marinus_Shih_2016,Prochlorococcus,marinus,MIT9313,6.58,,309,,1400,,59.9,,25,1Ac,canon,Cyanobacteria,Bacteria,pKa from Iniguez et al. 2021,Shih 2016
distans_Orr_2016,Puccinellia,distans,,5.4,,22.2,,488,,104,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
lemmonii_Orr_2016,Puccinellia,lemmonii,,5.2,,28.1,,1120,,102,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
maritima_Orr_2016,Puccinellia,maritima,,5.4,,20.8,,676,,106,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
nuttalliana_Orr_2016,Puccinellia,nuttalliana,,4,,25.2,,717,,105,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
montana_Orr_2016,Pueraria,montana,,2.7,,20.9,,679,,101,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
sphaeroides_Zhou_2019,Cereibacter,sphaeroides,,3.7,,60,,1724,,58,,25,1C,,Alphaproteobacteria,Bacteria,pKa & pH from Wilson et al. 2018,Zhou 2019
palustris_Satagopan_2014,Rhodopseudomonas,palustris,CGA009,4.9,,104,,277,,12,,30,2,,Alphaproteobacteria,Bacteria,pKa from Iniguez et al. 2021,Satagopan 2014
rubrum_Iñiguez_2021,Rhodospirillum,rubrum,,4.3,,78.4,,242,,11.3,,25,2,,Alphaproteobacteria,Bacteria,methodology-corrected average from Iñiguez et al. 2021 across multiple strains,Iñiguez 2021
rubrum_Mueller-Cajar_2007,Rhodospirillum,rubrum,,12.3,,149,,159,,9,,25,2,,Alphaproteobacteria,Bacteria,"Used Kane method for S so no pKa correction needed; no pKa listed for Kc, but cites Whitney & Sharwood 2007; Whitney & Sharwood 2007 does not report pKa, but Iniguez et al. 2021 cites a pKa of 6.25 for that study",Mueller-Cajar 2007
rubrum_Satagopan_2014,Rhodospirillum,rubrum,,4.3,,125,,143,,13,,30,2,,Alphaproteobacteria,Bacteria,pKa from Iniguez et al. 2021,Satagopan 2014
officinarum_Hermida-Carrera_2016,Saccharum,officinarum,hybrid S. officinarum x Saccharum spontaneum,3.9,,26.3,,1256,,82.2,,25,1B,canon,C4 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
cereale_Prins_2016,Secale,cereale,Agronom,3.23,,20.2,,472,,91.5,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
viridis_Boyd_2015,Setaria,viridis,,5.44,,31.22,,359,,58.41,,25,1B,canon,C4 plants,Plants,kcatC is the only thing reported directly; calculated in Iniguez et al. 2019,Boyd 2015
viridis_Sharwood_2016b,Setaria,viridis,,5.9,,18.1,,619,,72.7,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
marinoi_Valegård_2018,Skeletonema,marinoi,,4.665,,48,,1810,,96,,25,1D,canon,Diatoms,Algae,pH from Carmo-Silva et al. 2010,Valegård 2018
lycopersicum_Hermida-Carrera_2016,Solanum,lycopersicum,Roma VF,2.3,,9.7,,363,,92.4,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
tuberosum_Hermida-Carrera_2016,Solanum,tuberosum,Erlanger,2,,9.6,,295,,95.4,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
stenocarpa_Orr_2016,Sphenostylis,stenocarpa,,2.8,,17.4,,574,,93.6,,25,1B,canon,C3 plants,Plants,Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there.,Orr 2016
oleracea_Hermida-Carrera_2016,Spinacia,oleracea,Butterfly,2.4,,14.1,,284,,97,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
oleracea_Iñiguez_2021,Spinacia,oleracea,,1.9,,11.9,,479,,87.2,,25,1B,canon,C3 plants,Plants,methodology-corrected average from Iñiguez et al. 2021 across multiple cultivats,Iñiguez 2021
oleracea_1_Jordan_1984,Spinacia,oleracea,,1.719,,11,,500,,88,,25,1B,canon,C3 plants,Plants,Table 2; Sc/o determined with a different method so that pKa adjustment was not necessary; kcat converted from Vc with factor of 1.146,Jordan 1984
oleracea_Kubien_2008,Spinacia,oleracea,,3.2,,12.1,,574,,79.8,,25,1B,canon,C3 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
oleracea_Zhu_1998,Spinacia,oleracea,,2.7,,11,,520,,92,,25,1B,canon,C3 plants,Plants,"Very light on details, pH could be wrong for kcat",Zhu 1998
laxum_Sharwood_2016b,Steinchisma,laxum,,2.3,,7.7,,419,,91.4,,25,1B,canon,C3 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
elongatus_Mueller-Cajar_2008,Synechococcus,elongatus,6301,11.8,,200,,199,,41.5,,25,1Bc,canon,Cyanobacteria,Bacteria,"Used Kane method for S so no pKa correction needed; no pKa listed for Kc, but cites Whitney & Sharwood 2007; Whitney & Sharwood 2007 does not report pKa, but Iniguez et al. 2021 cites a pKa of 6.25 for that study",Mueller-Cajar 2008
elongatus_Read_1992b,Synechococcus,elongatus,6301,2.57,,142,,664,,41,,25,1Bc,canon,Cyanobacteria,Bacteria,kcat value is suspect here. unclear how they quantitated protein. it's OK since we have other measurements of this rubisco,Read 1992b
elongatus_Read_1994,Synechococcus,elongatus,6301,3.71,,167,,529,,41,,25,1Bc,canon,Cyanobacteria,Bacteria,kcat value is suspect here. unclear how they quantitated protein. it's OK since we have other measurements of this rubisco,Read 1994
elongatus_Shih_2016,Synechococcus,elongatus,6301,9.78,,152,,1230,,50.3,,25,1Bc,canon,Cyanobacteria,Bacteria,pKa from Iniguez et al. 2021,Shih 2016
elongatus_Zhu_1998,Synechococcus,elongatus,6301,6.6,,81,,460,,47,,25,1Bc,canon,Cyanobacteria,Bacteria,"In Galmes et al., species is 'lividus', but based on the protein sequence & date, it's actually elongatus PCC6301. In primary source 'wildtype.' Very light on details, pH could be wrong for kcat",Zhu 1998
synechococcus_sp_Iñiguez_2021,Synechococcus,sp,,7,,139.6,,690,,43.9,,25,1B,canon,Cyanobacteria,Bacteria,methodology-corrected average from Iñiguez et al. 2021 across multiple strains,Iñiguez 2021
candida_Orr_2016,Tephrosia,candida,,2.2,,15.9,,481,,97.8,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
purpurea_Orr_2016,Tephrosia,purpurea,,2.2,,12.4,,333,,103,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
rhodesica_Orr_2016,Tephrosia,rhodesica,,2.2,,13.7,,565,,91.6,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
hyalina_Valegård_2018,Thalassiosira,hyalina,,4.101,,50,,1640,,99,,25,1D,canon,Diatoms,Algae,pH from Carmo-Silva et al. 2010,Valegård 2018
nordenskioeldii_Valegård_2018,Thalassiosira,nordenskioeldii,,4.658,,122,,1420,,82,,25,1D,canon,Diatoms,Algae,pH from Carmo-Silva et al. 2010,Valegård 2018
oceanica_Young_2016,Thalassiosira,oceanica,CS-427,2.4,,65,,954,,80,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
weissflogii_Young_2016,Thalassiosira,weissflogii,CCMP1336,3.2,,65,,2030,,79,,25,1D,canon,Diatoms,Algae,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
kodakarensis_Kreel_2015,Thermococcus,kodakarensis,,16.6,,79,,43,,6,,83,3,alt,Archaea,Archaea,"Points to Kreel & Tabita 2007, but no pKa given there either. KC determined anaerobically",Kreel 2015
kodakarensis_Yoshida_2007,Thermococcus,kodakarensis,,0.25,,52.3,,900,,11,,25,3,alt,Archaea,Archaea,,Yoshida 2007
elongatus_Gubernator_2008,Thermosynechococcus,vestitus,,2.65,,54.3,,841,,82.1,,25,1Bc,canon,Cyanobacteria,Bacteria,,Gubernator 2008
elongatus_Occhialini_2015,Thermosynechococcus,vestitus,7942,14.4,,172,,585,,43,,25,1Bc,canon,Cyanobacteria,Bacteria,"Heterologously expressed in Tobacco. Also data in the paper where rbcX is co-expressed - about the same. Only cites CO2 concentration, not pKa used for calculation. I think it's impossible to determine it from what's given in the paper.",Occhialini 2015
denitrificans_2_Hernandez_1996,Thiobacillus,denitrificans,,3.5,,256,,619,,13.3,,25,2,,Betaproteobacteria,Bacteria,"Points to read & tabita 1992 for methods. Calculated S from reported values, which is slightly different than reported S of 14",Hernandez 1996
denitrificans_Iaq_Hernandez_1996,Thiobacillus,denitrificans,,1.9,,138,,1640,,42.7,,25,1Aq,,Betaproteobacteria,Bacteria,"Points to read & tabita 1992 for methods. Calculated S from values, which is slightly different than reported 46",Hernandez 1996
lutea_Heureux_2017,Tisochrysis,lutea,,2.2,,24.1,,800,,89,,25,1D,canon,Haptophytes,Algae,"Methods same as Sharwood 2016 - assuming pH reported there for 25 C. Uses 2 pKa model, not clear if correction should apply",Heureux 2017
Cando_Prins_2016,Triticale,Cando,,3.62,,16.1,,384,,99.7,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
Rotego_Prins_2016,Triticale,Rotego,,3.46,,15.1,,369,,96.8,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
Talentro_Prins_2016,Triticale,Talentro,,3.36,,15.8,,436,,95.2,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
aestivum_Carmo-Silva_2010,Triticum,aestivum,,3,,10.9,,341,,100,,25,1B,canon,C3 plants,Plants,,Carmo-Silva 2010
aestivum_Hermida-Carrera_2016,Triticum,aestivum,Cajeme,2.2,,11.3,,620,,100,,25,1B,canon,C3 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
aestivum_Iñiguez_2021,Triticum,aestivum,,2.7,,11.9,,429,,96.3,,25,1B,canon,C3 plants,Plants,methodology-corrected average from Iñiguez et al. 2021 across multiple cultivars,Iñiguez 2021
aestivum_Makino_1988,Triticum,aestivum,,2.964,,11.2,,383,,119.9,,25,1B,canon,C3 plants,Plants,S calculated from Vo given,Makino 1988
aestivum_Orr_2016,Triticum,aestivum,,4.9,,20.1,,658,,100,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
aestivum_C_Prins_2016,Triticum,aestivum,C,3.57,,16,,402,,100,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
aestivum_SATYN_II_9410_Prins_2016,Triticum,aestivum,SATYN_II_9410,3.26,,17.6,,469,,93.8,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
aestivum_SATYN_II_9440_Prins_2016,Triticum,aestivum,SATYN_II_9440,3.33,,17.9,,465,,96.2,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
aestivum_SATYN_II_9428_Prins_2016,Triticum,aestivum,SATYN_II_9428,3.64,,15.7,,379,,92.9,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
aestivum_Zhu_1998,Triticum,aestivum,,2.5,,14,,730,,98,,25,1B,canon,C3 plants,Plants,"Very light on details, pH could be wrong for kcat",Zhu 1998
boeoticum_Orr_2016,Triticum,boeoticum,,3.8,,19.7,,905,,96,,25,1B,canon,C3 plants,Plants,"Points to Prins JExpB 2016 for methods. Extracted pH and pKa from there. S measured at pH 8.2, rest measured at 8.0. Not sure why. ",Orr 2016
dicoccon_ENT_2129_Prins_2016,Triticum,dicoccon,CI12214 (ENT:2129),3.55,,15.4,,399,,94.1,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
dicoccon_ENT_2128_Prins_2016,Triticum,dicoccon,CI12214 (ENT:2128),3.57,,13.5,,397,,90.9,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
dicoccon_PI355483_Prins_2016,Triticum,dicoccon,PI355483,3.36,,16.8,,456,,95.2,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
dicoccon_ENT_2126_Prins_2016,Triticum,dicoccon,CI12214 (ENT:2126),3.55,,18.6,,485,,93.8,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
monococcum_Prins_2016,Triticum,monococcum,,3.18,,14,,401,,104,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
timonovum_Prins_2016,Triticum,timonovum,,3.48,,16.8,,495,,101,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
timopheevii_Prins_2016,Triticum,timopheevii,,3.43,,16.2,,429,,102,,25,1B,canon,C3 plants,Plants,all wheat variants,Prins 2016
mosambicensis_Sharwood_2016b,Urochloa,mosambicensis,,5.7,,14.8,,464,,82.5,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
panicoides_Sharwood_2016b,Urochloa,panicoides,,5.6,,15.4,,444,,78.3,,25,1B,canon,C4 plants,Plants,pKa not needed for Sc/o; pKa from Iniguez et al. 2021,Sharwood 2016b
mays_Hermida-Carrera_2016,Zea,mays,Carella,4.1,,31.6,,784,,87.3,,25,1B,canon,C4 plants,Plants,"Ko is reported in Iniguez databases (Iniguez et al. 2019, Iniguez et al. 2021, etc.) although only kcat_o/Ko is reported in original paper",Hermida-Carrera 2016
mays_Iñiguez_2021,Zea,mays,,3.7,,21,,444,,87.7,,25,1B,canon,C4 plants,Plants,methodology-corrected average from Iñiguez et al. 2021 across multiple cultivars,Iñiguez 2021
mays_Kubien_2008,Zea,mays,,4.05,,21.2,,157,,74.9,,25,1B,canon,C4 plants,Plants,Used Kane method for S so no pKa correction needed,Kubien 2008
mays_Young_2016,Zea,mays,,5.5,,19,,397,,88,,25,1B,canon,C4 plants,Plants,pKa from Whitney et al. 2011; pKa not necessary for Sc/o,Young 2016
japonica_Carmo-Silva_2010,Zoysia,japonica,,4.4,,18.5,,403,,84.1,,25,1B,canon,C4 plants,Plants,,Carmo-Silva 2010
synechococcus_aguiló-nicolau_2023,Synechococcus,sp,PCC 6301,8.7,,147.2,,631.6,,48.2,,25,1Bc,canon,Cyanobacteria,Bacteria,Kane method for Sc/o so no pKa needed,Aguiló-Nicolau 2023
thermalis_aguiló-nicolau_2023,Chroococcidiopsis,thermalis,KOMAREK 1964/111,9.1,,87.3,,1162.6,,66,,25,1Bc,canon,Cyanobacteria,Bacteria,Kane method for Sc/o so no pKa needed,Aguiló-Nicolau 2023
angustifolia_capó-bauçà_2023,Posidonia,angustifolia,,1.9,,22,,1313,,93.3,,25,1B,canon,Aquatic plants,Plants,Used Kane method for Sc/o so no need for pKa; pKa for Kc from Sharwood 2016 via Iñiguez 2021,Capó-Bauçà 2023
australis_capó-bauçà_2023,Posidonia,australis,,1.84,,21.1,,1142,,91.5,,25,1B,canon,Aquatic plants,Plants,Used Kane method for Sc/o so no need for pKa; pKa for Kc from Sharwood 2016 via Iñiguez 2021,Capó-Bauçà 2023
coriacea_capó-bauçà_2023,Posidonia,coriacea,,2.13,,20.1,,1139,,90,,25,1B,canon,Aquatic plants,Plants,Used Kane method for Sc/o so no need for pKa; pKa for Kc from Sharwood 2016 via Iñiguez 2021,Capó-Bauçà 2023
sinuosa_capó-bauçà_2023,Posidonia,sinuosa,,1.41,,19.6,,995,,93.1,,25,1B,canon,Aquatic plants,Plants,Used Kane method for Sc/o so no need for pKa; pKa for Kc from Sharwood 2016 via Iñiguez 2021,Capó-Bauçà 2023
oceanica_capó-bauçà_2023,Posidonia,oceanica,,2.19,,45,,1329,,90.1,,25,1B,canon,Aquatic plants,Plants,Used Kane method for Sc/o so no need for pKa; pKa for Kc from Sharwood 2016 via Iñiguez 2021,Capó-Bauçà 2023
gallionella_liu_2022,Gallionella,sp,,15.7,,172,,92,,22,,25,2,,Betaproteobacteria,Bacteria,Uses Parry method for Sc/o,Liu 2022
lanceolatum_capó-bauçà_2022a,Alisma,lanceolatum,,3.42,,12.2,,463.8,,81.7,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
maritima_capó-bauçà_2022a,Triglochin,maritima,,2.19,,7.2,,414.2,,79.3,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
demersum_capó-bauçà_2022a,Ceratophyllum,demersum,,3.61,,14.9,,525.5,,82.7,,25,1B,canon,Basal angiosperms,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
gigantea_capó-bauçà_2022a,Vallisneria,gigantea,,3.44,,13.2,,401.9,,82,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
pectinata_capó-bauçà_2022a,Stuckenia,pectinata,,3.17,,25,,748.3,,81.6,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
cirrhosa_capó-bauçà_2022a,Ruppia,cirrhosa,,3.27,,17.8,,642.1,,84,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
oceanica_capó-bauçà_2022a,Posidonia,oceanica,,2.17,,35.1,,1328.2,,91,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
nodosa_capó-bauçà_2022a,Cymodocea,nodosa,,2.75,,25.7,,983.9,,90.4,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
marina_capó-bauçà_2022a,Zostera,marina,,2.8,,25.3,,1210,,85.8,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
noltii_capó-bauçà_2022a,Zostera,noltii,,2.57,,29.8,,851.9,,72.8,,25,1B,canon,Aquatic plants,Plants,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022a
acetabulum_capó-bauçà_2022b,Acetabularia,acetabulum,,3.64,,19.4,,761,,75.7,,25,1B,canon,Macroalgae,Algae,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022b
stellata_capó-bauçà_2022b,Anadyomene,stellata,,2.43,,28.4,,898,,61.6,,25,1B,canon,Macroalgae,Algae,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022b
pavonica_capó-bauçà_2022b,Padina,pavonica,,2.33,,18.4,,2056,,115.8,,25,1D,canon,Macroalgae,Algae,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022b
fasciola_capó-bauçà_2022b,Dictyota,fasciola,,2.07,,17.3,,1327,,126.1,,25,1D,canon,Macroalgae,Algae,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022b
elongata_capó-bauçà_2022b,Ellisolandia,elongata,,3.4,,36.2,,1875,,137.4,,25,1D,canon,Macroalgae,Algae,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022b
tenerrima_capó-bauçà_2022b,Palisada,tenerrima,,1.65,,12.2,,840,,146.5,,25,1D,canon,Macroalgae,Algae,pKa from Galmés 2014; Kane method for Sc/o so no need for pKa there,Capó-Bauçà 2022b
breve_banda_2020,Promineifilum,breve,,2.23,,22.2,,401,,36.1,,25,1’,,Chloroflexi,Bacteria,,Banda 2020
synechococcus_banda_2020,Synechococcus,sp,PCC 6301,14.3,,235,,983,,56.1,,25,1Bc,canon,Cyanobacteria,Bacteria,,Banda 2020
