R: Model Rubisco Carboxylation Rate Across Temperature, CO2, and O2

# Model Rubisco Carboxylation Rate Across Temperature, CO2, and O2

## Documentation for package ‘rbcmodel’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

check_DHScale | Validator for the S3 class 'DHScale'
check_enzyme | Validator for the S3 class 'enzyme'
cite_Rbc | Cite data collected in the package.
CO2_comparison | Creates a combined model that compares two different enzymes
CO2_dependence | Function factory to model an enzyme's carbon output
DHScale | Create an DHScale instance by looking up the relevant data in database
Enzyme | Create an Enzyme instance by looking up the relevant data in database
kinetics_T_dep | Function factory for calculating temperature-dependent kinetics
last_non_NA | Return the last non-NA value from a vector.
make_4D_grid | Construct a 4D grid
mean_if_num | Compute the mean of a vector if the vector is numerical or logical. Otherwise, return the common value if all entries take the same value, or NA in any other cases.
median_if_num | Compute the median of a vector if the vector is numerical or logical. Otherwise, return the common value if all entries take the same value, or NA in any other cases.
merge_entries | Merge (combine) several entries from a data.frame.
modify_DHScale | Create a new instance of S3 class 'DHScale', starting from a previous instance
modify_enzyme | Create a new instance of S3 class 'enzyme' starting from a previous instance
new_DHScale | Constructor for the S3 class 'DHScale'.
new_enzyme | Constructor for the S3 class 'enzyme'.
permute_4D_grid | Permute the independent variables in a 4D grid created by make_4D_grid().
plot_slice_3D | Create a plot of the dependent variable in a 3D slice
print.DHScale | Customized print for S3 class 'DHScale'
print.enzyme | Customized print for S3 class 'enzyme'
refs_to_citation | References table
Rubisco_25C | Comprehensive Rubisco kinetics data
Rubisco_abridged | Abridged Rubisco kinetics data
Rubisco_aliases | Rubisco alias table
search_alias | Search for data of Rubisco enzyme alias from the database
search_DHScale | Search for temperature dependence DHScale from the database
search_enzyme | Search for data of Rubisco enzyme from the database
slice_4D_grid | Create a 3D slice of 4D grid created by make_4D_grid().
temp_dep_abridged | Abridged Delta H temperature scaling data
temp_dep_averaged | Averaged Delta H temperature scaling data
transpose_3D_slice | Transpose the non-constant independent variables in a 3D grid created by slice_4D_grid().