Package: rbcmodel
Title: Model Rubisco Carboxylation Rate Across Temperature, CO2, and O2
Version: 1.0.1
Authors@R: c(
    person("Kaitlin", "Harrison", email = "k.harrison.sci@gmail.com", role = c("aut", "cre", "cph")),
    person("Wing-Ho", "Ko", email = "wingho.ko@alum.mit.edu", role = "aut"))
Description: Collects published kinetics of ribulose 1,5-bisphosphate
    carboxylase/oxygenase (Rubisco) and uses these kinetics to model the
    carboxylation rate across CO2 and O2 concentrations and different
    temperatures. The carboxylation rate can be modeled as the gross rate or
    the net rate, which takes into account the oxygenase activity of the
    enzyme using one of the three known phosphoglycolate salvage pathways.
    Custom enzymes and temperature dependences can be created with user
    kinetics, or published kinetics can be accessed through a meta-analysis
    contained within the package. An expansion of methods from Harrison et al.
    (2025) <doi:10.1128/aem.00604-25>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: plot3D
Depends: R (>= 3.5)
LazyData: true
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
RoxygenNote: 8.0.0
NeedsCompilation: no
Packaged: 2026-07-24 18:49:58 UTC; kehar
Author: Kaitlin Harrison [aut, cre, cph],
  Wing-Ho Ko [aut]
Maintainer: Kaitlin Harrison <k.harrison.sci@gmail.com>
Repository: CRAN
Date/Publication: 2026-08-04 13:50:02 UTC
Built: R 4.5.2; ; 2026-08-04 17:46:57 UTC; unix
