R: Bioinformatic Distances

# Bioinformatic Distances

## Documentation for package ‘BIDistances’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

calculateMemoryDemandGPU | Plan Device-Memory Batches for Weighted Euclidean Distances
Cosine_Distance | Cosine Distance Between Rows
dip.test.fast | Fast Hartigan Dip Test for Large Samples
dip_test_fast | Fast Hartigan Dip Test for Large Samples
distance-conventions | Distance, Metric, and Dissimilarity Conventions in BIDistances
DistanceDistributionAnalysis | Analyze and Select Distance Distributions
DistanceDistributions | Calculate and Select Informative Distance Distributions
DistanceMatrix | Pairwise Distance, Dissimilarity, or Similarity Matrix
DistanceOneToAll | Distances from One Point to All Rows of a Matrix
DistanceProperties | Mathematical Property Registry for BIDistances Methods
DTW_Distance | Dynamic Time Warping Distance
EndresSchindelin_Distance | Endres-Schindelin Distance Matrix Between Variables
endresSchindelin_Distribution | Endres-Schindelin Distance Between Probability Mass Vectors
endresSchindelin_TwoSamplePDF | Endres-Schindelin Distance Between Two Samples
EuclideanGPU_Distance | Weighted Euclidean Distances with an Optional OpenCL Backend
EuclideanMulticore_Distance | Fast Pairwise Euclidean Distance Matrix
fast_dip_stat | Fast Hartigan Dip Statistic
fast_dip_test | Fast Hartigan Dip Test for Large Samples
fast_dip_test_matrix | Fast Hartigan Dip Tests for Matrix Columns
Fractional_Distance | Fractional Minkowski Pairwise Distances
Gini_Distance | Gini Distance Between Cases
Hearingloss_N109 | Hearingloss data
Hellinger_Distance | Hellinger Distance Between Binary-Class Conditional Densities
Hepta | Hepta introduced in [Ultsch, 2003]
IntraClusterBoundaryCounts | Count Intra-Cluster Distances Above a Boundary
Jaccard_Distance | Generalized Jaccard Distance Between Cases
KNearestNeighborsFromDistance | Find Nearest Neighbors from a Distance Matrix
Kullback_Leibler_div | Smoothed Kullback-Leibler Divergence
Mahalanobis_Distance | Pairwise Squared Generalized Mahalanobis Distances
Minkowski_Distance | Weighted Minkowski Distances with Selectable CPU and OpenCL Backends
MSMD_Distance | Move-Split-Merge Distance
NearestNeighborIndex | Index of the Nearest Other Row
SharedNeighbor_Distance | Shared-Nearest-Neighbor Distance
Tfidf_dist | TF-IDF-Derived Distance Between Genes
Tfidf_Distance | TF-IDF-Derived Distance Between Genes
ToroidalEuclideanDistanceOneToAll | Toroidal Euclidean Distances from One Position
ToroidalEuclidean_Distance | Pairwise Toroidal Euclidean Distances
TransformSimilarity2MetricDistance | Transform a Similarity Matrix to a Metric Distance Matrix
TWED_Distance | Time Warp Edit Distance
VariablePrecision | Smallest Within-Variable Differences
Wasserstein_Distance | Wasserstein Distance Between Cases