R: Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)

# Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)

## Documentation for package ‘FinePop2’ version 0.6

- DESCRIPTION file.

## Help Pages

FinePop2-package | Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)
clip.GENEPOP | Remove designated markers from a GENEPOP file.
globalFST | Genome-wide global FST (Weir & Cockerham 1984).
GLS | Generalized least squres for regression analysis considering auto correlation.
herring | An example dataset of Atlantic herring.
jsmackerel | An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.
locus_specificFST | Locus-specific global FST (Kitada et al. 2007, 2017).
pop_pairwiseFST | Genome-wide poppulation-paiwise FST (Nei & Chesser 1983).
pop_specificFST | Genome-wide population-specific FST (Weir & Goudet 2017).
read.GENEPOP | Create a genotype data object of populations from a GENEPOP format file.