Power Analysis for Differential Expression Studies
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Documentation for package ‘depower’ version 2026.1.30
Help Pages
| add_power_ci | Add confidence intervals for power estimates |
| add_power_pi | Add Bayesian posterior predictive intervals for power estimates |
| asymptotic | Test statistic distribution under the null |
| distribution | Test statistic distribution under the null |
| eval_power_ci | Evaluate confidence intervals for power estimates |
| eval_power_pi | Evaluate Bayesian posterior predictive intervals for power estimates |
| glmm_bnb | GLMM for BNB ratio of means |
| glmm_poisson | GLMM for Poisson ratio of means |
| glm_nb | GLM for NB ratio of means |
| lrt_bnb | Likelihood ratio test for BNB ratio of means |
| lrt_nb | Likelihood ratio test for NB ratio of means |
| mle_bnb | MLE for BNB |
| mle_bnb_alt | MLE for BNB |
| mle_bnb_null | MLE for BNB |
| mle_nb | MLE for NB |
| mle_nb_alt | MLE for NB |
| mle_nb_null | MLE for NB |
| nll_bnb | Negative log-likelihood for BNB |
| nll_bnb_alt | Negative log-likelihood for BNB |
| nll_bnb_null | Negative log-likelihood for BNB |
| nll_nb | Negative log-likelihood for NB |
| nll_nb_alt | Negative log-likelihood for NB |
| nll_nb_null | Negative log-likelihood for NB |
| plot.depower | Plot power objects |
| power | Simulated power |
| simulated | Test statistic distribution under the null |
| sim_bnb | Simulate BNB data |
| sim_log_lognormal | Simulate log-transformed lognormal data |
| sim_nb | Simulate NB data |
| t_test_paired | Paired and one-sample t-Tests |
| t_test_welch | Welch's t-Test |
| wald_test_bnb | Wald test for BNB ratio of means |
| wald_test_nb | Wald test for NB ratio of means |