Package: pureseqtmr
Title: Predict Transmembrane Protein Topology
Version: 1.4.2
Authors@R: c(
    person("Richèl J.C.", "Bilderbeek", email = "rjcbilderbeek@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1107-7049")))
Description: Proteins reside in either the cell plasma or in the
    cell membrane. A membrane protein goes through the 
    membrane at least once. Given the amino acid sequence of a
    membrane protein, the tool
    'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>,
    as described in "Efficient And Accurate Prediction Of Transmembrane 
    Topology From Amino acid sequence only.", Wang, Qing, et al (2019), 
    <doi:10.1101/627307>),
    can predict the topology of a membrane protein. This package
    allows one to use 'PureseqTM' from R.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: data.table, devtools, dplyr, ggplot2, Peptides, plyr,
        rappdirs, readr, stringr, tibble, Rcpp
Suggests: testthat, knitr, markdown, rmarkdown, profvis
URL: https://github.com/richelbilderbeek/pureseqtmr/
BugReports: https://github.com/richelbilderbeek/pureseqtmr/issues
VignetteBuilder: knitr
SystemRequirements: PureseqTM
        (https://github.com/PureseqTM/pureseqTM_package)
LinkingTo: Rcpp
Config/roxygen2/version: 8.0.0
NeedsCompilation: yes
Packaged: 2026-07-04 09:03:07 UTC; richel
Author: Richèl J.C. Bilderbeek [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1107-7049>)
Maintainer: Richèl J.C. Bilderbeek <rjcbilderbeek@gmail.com>
Repository: CRAN
Date/Publication: 2026-07-04 10:10:14 UTC
Built: R 4.5.2; x86_64-apple-darwin20; 2026-07-04 11:04:49 UTC; unix
Archs: pureseqtmr.so.dSYM
