AHA                     All-H Analyzer
Bio-class               Class '"Bio"'
CM2SOM                  Convert conditioning model to operating model
CM_MSY                  Plot reference points from conditioning model
Habitat-class           Class '"Habitat"'
Harvest-class           Class '"Harvest"'
Hatchery-class          Class '"Hatchery"'
Historical-class        Class '"Historical"'
P_PNI50                 Example performance metrics
SMSE-class              Class '"SMSE"'
SOM-class               Class '"SOM"'
calc_SRR                Calculate abundance from density-dependent
                        mortality
calc_SRRpars            Convert density-dependent survival parameters
calc_Smsy_Ricker        Ricker reference points
calc_ref                Reference points
calc_smolt              Smolt production
check_SOM               Check inputs to SOM object
compare                 Compare scenarios in markdown
compare_spawners        Compare simulation runs
compare_statevar_ts     Compare state variables from simulation runs
fit_CM                  Fit conditioning model to historical data
get_report              Figures for conditioning model results
glossary                salmonMSE glossary
plot_LHG                Plot life history groups and release strategies
plot_decision_table     Decision table of performance metrics
plot_statevar_ts        Plot core output from salmonMSE
plot_tradeoff           Tradeoff figure
report                  Generate markdown reports
report_CM               Conditioning model markdown report
salmonMSE               Run salmonMSE
salmonMSE_env           Environment to store salmon specific variables,
                        e.g, fitness, during the simulation
simpleSOM-class         Class '"simpleSOM"'
simple_SOM              Example objects from salmonMSE
