# Generated by roxygen2: do not edit by hand

S3method(add_predictors,RasterStack)
S3method(add_predictors,SpatRaster)
S3method(add_predictors,character)
S3method(add_predictors,sf)
S3method(add_predictors,stars)
S3method(add_scenarios,"NULL")
S3method(add_scenarios,RasterStack)
S3method(add_scenarios,SpatRaster)
S3method(add_scenarios,character)
S3method(add_scenarios,stars)
S3method(base::plot,input_sdm)
S3method(base::plot,occurrences)
S3method(base::plot,predictions)
S3method(base::plot,sdm_area)
S3method(base::print,ensembles)
S3method(base::print,input_sdm)
S3method(base::print,models)
S3method(base::print,occurrences)
S3method(base::print,predictions)
S3method(base::print,sdm_area)
S3method(filter,input_sdm)
S3method(filter,occurrences)
S3method(filter,sdm_area)
S3method(mutate,input_sdm)
S3method(mutate,sdm_area)
S3method(occurrences_sdm,character)
S3method(occurrences_sdm,data.frame)
S3method(occurrences_sdm,sf)
S3method(occurrences_sdm,tbl_df)
S3method(predict_sdm,sdm_area)
S3method(sdm_area,RasterStack)
S3method(sdm_area,SpatRaster)
S3method(sdm_area,character)
S3method(sdm_area,sf)
S3method(sdm_area,stars)
S3method(select,input_sdm)
S3method(select,sdm_area)
S3method(set_predictor_names,input_sdm)
S3method(set_predictor_names,sdm_area)
S3method(write_gpkg,sdm_area)
export(GBIF_data)
export(WorldClim_data)
export(add_ensembles)
export(add_input_sdm)
export(add_models)
export(add_occurrences)
export(add_predictions)
export(add_predictors)
export(add_scenarios)
export(add_sdm_area)
export(algorithms_used)
export(background)
export(background_data)
export(background_method)
export(buffer_sdm)
export(correlate_sdm)
export(data_clean)
export(ensemble_sdm)
export(filter_species)
export(gcms_ensembles)
export(get_coords)
export(get_ensembles)
export(get_models)
export(get_occurrences)
export(get_pca_model)
export(get_pdp_sdm)
export(get_predictions)
export(get_predictor_names)
export(get_predictors)
export(get_scenarios_data)
export(get_sdm_area)
export(get_tune_length)
export(get_validation_metrics)
export(input_sdm)
export(is_input_sdm)
export(is_models)
export(is_occurrences)
export(is_predictions)
export(is_sdm_area)
export(join_area)
export(mapview_ensembles)
export(mapview_grid)
export(mapview_occurrences)
export(mapview_predictions)
export(mapview_predictors)
export(mapview_scenarios)
export(mean_validation_metrics)
export(models_hyperparameters)
export(multicollinearity_sdm)
export(n_background)
export(n_pseudoabsences)
export(n_records)
export(occurrences_as_df)
export(occurrences_sdm)
export(pca_predictors)
export(pca_summary)
export(pdp_sdm)
export(plot_background)
export(plot_ensembles)
export(plot_grid)
export(plot_niche)
export(plot_occurrences)
export(plot_predictions)
export(plot_predictors)
export(plot_scenarios)
export(predict_sdm)
export(prediction_change_sdm)
export(pseudoabsence_data)
export(pseudoabsence_method)
export(pseudoabsences)
export(scenarios_names)
export(sdm_area)
export(sdm_as_raster)
export(sdm_as_stars)
export(sdm_as_terra)
export(select_predictors)
export(select_scenarios)
export(selected_variables)
export(set_predictor_names)
export(set_scenarios_names)
export(set_variables_names)
export(species_names)
export(stack_sdm)
export(summary_sdm)
export(summary_sdm_presence_only)
export(test_variables_names)
export(train_sdm)
export(tsne_sdm)
export(tuneGrid_sdm)
export(use_esm)
export(use_mem)
export(validate_on_independent_data)
export(varImp_sdm)
export(vif_predictors)
export(vif_summary)
export(write_background)
export(write_ensembles)
export(write_gpkg)
export(write_grid)
export(write_models)
export(write_occurrences)
export(write_predictions)
export(write_predictors)
export(write_pseudoabsences)
export(write_validation_metrics)
import(checkCLI)
importFrom(CoordinateCleaner,cc_cap)
importFrom(CoordinateCleaner,cc_cen)
importFrom(CoordinateCleaner,cc_dupl)
importFrom(CoordinateCleaner,cc_equ)
importFrom(CoordinateCleaner,cc_inst)
importFrom(CoordinateCleaner,cc_sea)
importFrom(CoordinateCleaner,cc_val)
importFrom(ECDFniche,mahal.dist)
importFrom(caret,confusionMatrix)
importFrom(caret,createDataPartition)
importFrom(caret,getModelInfo)
importFrom(caret,sensitivity)
importFrom(caret,specificity)
importFrom(caret,thresholder)
importFrom(caret,train)
importFrom(caret,trainControl)
importFrom(caret,varImp)
importFrom(checkmate,makeAssertCollection)
importFrom(checkmate,testDirectory)
importFrom(checkmate,testFile)
importFrom(checkmate,test_list)
importFrom(cli,cli_abort)
importFrom(cli,cli_alert)
importFrom(cli,cli_alert_warning)
importFrom(cli,cli_inform)
importFrom(cli,cli_progress_along)
importFrom(cli,cli_warn)
importFrom(data.table,rbindlist)
importFrom(dismo,bioclim)
importFrom(dismo,predict)
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,contains)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,group_split)
importFrom(dplyr,inner_join)
importFrom(dplyr,join_by)
importFrom(dplyr,last_col)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n)
importFrom(dplyr,reframe)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,setdiff)
importFrom(dplyr,summarise)
importFrom(dplyr,where)
importFrom(ecospat,ecospat.boyce)
importFrom(fs,dir_create)
importFrom(fs,dir_delete)
importFrom(fs,dir_exists)
importFrom(fs,dir_ls)
importFrom(fs,path)
importFrom(fs,path_dir)
importFrom(fs,path_ext_remove)
importFrom(fs,path_file)
importFrom(ggplot2,aes)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_sf)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_color_viridis_c)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,scale_fill_viridis_d)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_density_2d_filled)
importFrom(ggplot2,stat_summary_2d)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggspatial,annotation_north_arrow)
importFrom(ggspatial,annotation_scale)
importFrom(ggspatial,north_arrow_fancy_orienteering)
importFrom(glue,glue)
importFrom(gtools,mixedsort)
importFrom(maxnet,maxnet)
importFrom(methods,as)
importFrom(methods,is)
importFrom(pROC,auc)
importFrom(pROC,roc)
importFrom(purrr,compact)
importFrom(purrr,detect_index)
importFrom(purrr,discard)
importFrom(purrr,list_rbind)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(raster,extract)
importFrom(sf,gdal_utils)
importFrom(sf,sf_extSoftVersion)
importFrom(sf,st_area)
importFrom(sf,st_as_sf)
importFrom(sf,st_as_sfc)
importFrom(sf,st_bbox)
importFrom(sf,st_buffer)
importFrom(sf,st_cast)
importFrom(sf,st_centroid)
importFrom(sf,st_collection_extract)
importFrom(sf,st_combine)
importFrom(sf,st_convex_hull)
importFrom(sf,st_coordinates)
importFrom(sf,st_crop)
importFrom(sf,st_crs)
importFrom(sf,st_difference)
importFrom(sf,st_drop_geometry)
importFrom(sf,st_geometry)
importFrom(sf,st_geometry_type)
importFrom(sf,st_intersection)
importFrom(sf,st_intersects)
importFrom(sf,st_join)
importFrom(sf,st_length)
importFrom(sf,st_make_valid)
importFrom(sf,st_nearest_feature)
importFrom(sf,st_read)
importFrom(sf,st_set_geometry)
importFrom(sf,st_transform)
importFrom(sf,st_union)
importFrom(sf,st_write)
importFrom(stars,read_stars)
importFrom(stars,st_as_stars)
importFrom(stars,st_dimensions)
importFrom(stars,st_extract)
importFrom(stars,st_get_dimension_values)
importFrom(stars,st_rasterize)
importFrom(stars,st_set_dimensions)
importFrom(stars,st_warp)
importFrom(stars,write_stars)
importFrom(stats,aggregate)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,mahalanobis)
importFrom(stats,na.omit)
importFrom(stats,pchisq)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,weighted.mean)
importFrom(stringdist,stringdist)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(terra,rast)
importFrom(tidyr,drop_na)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,replace_na)
importFrom(utils,combn)
importFrom(utils,file_test)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,unzip)
importFrom(utils,write.csv)
