R: Streamlining Functional Biogeography Analyses

# Streamlining Functional Biogeography Analyses

## Documentation for package ‘funbiogeo’ version 0.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

fb_aggregate_site_data | Aggregate Site Data Along Coarser Spatial Grid
fb_count_sites_by_species | Count Number of Sites Occupied by Species
fb_count_species_by_site | Count Number of Species per Site
fb_count_species_by_trait | Count Number of Species for Each Trait
fb_count_traits_by_species | Compute Number of Known Trait(s) per Species
fb_cwm | Compute community-weighted means (CWM) of trait values
fb_filter_sites_by_species_coverage | Filter sites with a given species coverage threshold
fb_filter_sites_by_trait_coverage | Filter sites with a given trait coverage threshold
fb_filter_species_by_site_coverage | Filter species with a given sites coverage threshold
fb_filter_species_by_trait_coverage | Filter species with a given traits coverage threshold
fb_filter_traits_by_species_coverage | Filter traits with a given species coverage threshold
fb_format_site_locations | Extract site x locations information from long format data
fb_format_site_species | Extract site x species information from long format data
fb_format_species_categories | Extract species x categories information from long format data
fb_format_species_traits | Extract species x traits information from long format data
fb_get_all_trait_coverages_by_site | Compute Trait Coverage per Site for Each Trait
fb_get_environment | Extract Raster Values at Location of Sites
fb_get_trait_combination_coverage | Compute site trait coverage for each trait combination
fb_get_trait_coverage_by_site | Compute Trait Coverage For Each Site Weighted by Abundance
fb_make_report | Create an Rmarkdown Report to Explore User Data
fb_map_raster | Map a Single Raster Layer
fb_map_site_data | Map Arbitrary Site Data
fb_map_site_traits_completeness | Map Trait Coverage Per Site
fb_plot_distribution_site_trait_coverage | Plot Distribution of Trait Coverages across all Sites
fb_plot_number_sites_by_species | Plot Number of Sites by Species
fb_plot_number_species_by_trait | Plot Number of Species per Trait
fb_plot_number_traits_by_species | Plot Number of Traits per Species
fb_plot_site_environment | Plot Position of Sites in Environmental Space
fb_plot_site_traits_completeness | Plot Trait Coverage per Site for each Trait
fb_plot_species_traits_completeness | Plot Trait Coverage per Species for each Trait
fb_plot_species_traits_missingness | Plot Trait Coverage per Species for each Trait
fb_plot_trait_combination_frequencies | Plot Present and Missing Trait Combinations Frequencies
fb_plot_trait_correlation | Plot Trait Correlation Matrix
fb_table_trait_summary | Summary Table on Traits (Missingness, Range, etc.)
woodiv_categories | Species x Categories of some Mediterranean Conifers
woodiv_locations | Sites x Locations of some Mediterranean Conifers
woodiv_site_species | Sites x Species of some Mediterranean Conifers
woodiv_traits | Species x Traits of some Mediterranean Conifers