Fast, Robust Clustering Algorithms for Gene Enrichment Data

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Documentation for package ‘richCluster’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cluster	Cluster Terms from Enrichment Results
cluster_bar	Cluster-level Bar Plot of Enrichment Significance
cluster_correlation_hmap	Create a Correlation Heatmap for a Specific Cluster
cluster_dot	Cluster-level Dot Plot of Enrichment Significance
cluster_hmap	Create a Heatmap of Clustered Enrichment Results
cluster_network	Create a Network Graph for a Specific Cluster
compare_network_graphs_plotly	Compare Network Graphs using Plotly
david_cluster	Cluster Terms using DAVID's method
export_df	Export Cluster Result as Dataframe
filter_clusters	Filter Clusters by Number of Terms
format_colnames	Format Column Names for Merging
full_network	Create a Network Graph for the Entire Distance Matrix
merge_enrichment_results	Merge List of Enrichment Results
plot_network_graph	Plot Network Graph for a Cluster
runRichCluster	Run clustering in C++ backend
term_bar	Term-level Bar Plot for a Specific Cluster
term_dot	Term-level Dot Plot for a Specific Cluster
term_hmap	Generate a Heatmap of Enrichment Results for Specific Clusters and Terms