BEdata                  An Example Dataset of a Bioequivalence Study
BY                      Analysis BY variable
CIest                   Confidence Interval Estimation
CONTR                   F Test with a Set of Contrasts
CV                      Coefficient of Variation in percentage
Coll                    Collinearity Diagnostics
Cor.test                Correlation test of multiple numeric columns
CumAlpha                Cumulative Alpha with various z's and ti
Diffogram               Plot Pairwise Differences
Drift                   Drift defined by Lan and DeMets for Group
                        Sequential Design
EMS                     Expected Mean Square Formula
ESTM                    Estimate Linear Function
ExitP                   Exit Probability with Cumulative Z-test in
                        Group Sequential Design
G2SWEEP                 Generalized inverse matrix of type 2 for linear
                        regression
GLM                     General Linear Model similar to SAS PROC GLM
IQLM                    Installation Qualification (IQ) report to a pdf
                        file
Kurtosis                Kurtosis
KurtosisSE              Standard Error of Kurtosis
LCL                     Lower Confidence Limit
LSM                     Least Squares Means
Max                     Max without NA
Mean                    Mean without NA
Median                  Median without NA
Min                     Min without NA
ModelMatrix             Model Matrix
N                       Number of observations
OBFBound                O'Brien-Fleming bounds for cumulative Z-test in
                        Group Sequential Design
OQLM                    Operational Qualification (OQ) report to a pdf
                        file
OR                      Odds Ratio of two groups
ORcmh                   Odds Ratio of two groups with strata by the CMH
                        method
ORinv                   Odds Ratio of two groups with strata by the
                        inverse variance method
ORmn                    Odds Ratio and Score CI of two groups with
                        strata by the MN method
ORmn1                   Odds Ratio and Score CI of two groups without
                        strata by the MN method
PDIFF                   Pairwise Difference
Pcor.test               Partial Correlation test of multiple columns
PocockBound             Pocock (fixed) Bound for the cumulative Z-test
                        with a final target alpha-value
QuartileRange           Interquartile Range
RD                      Risk Difference between two groups
RDinv                   Risk Difference between two groups with strata
                        by inverse variance method
RDmn                    Risk Difference and Score CI between two groups
                        with strata by the MN method
RDmn1                   Risk Difference and Score CI between two groups
                        without strata by the MN method
REG                     Regression of Linear Least Square, similar to
                        SAS PROC REG
RR                      Relative Risk of the two groups
RRinv                   Relative Risk of two groups with strata by
                        inverse variance method
RRmn                    Relative Risk and Score CI of two groups with
                        strata by the MN method
RRmn1                   Relative Risk and Score CI of two groups
                        without strata by the MN method
RanTest                 Test with Random Effects
Range                   Range
SD                      Standard Deviation
SEM                     Standard Error of the Sample Mean
SLICE                   F Test with Slice
SS                      Sum of Square
ScoreCI                 Score Confidence Interval for a Proportion or a
                        Binomial Distribution
Skewness                Skewness
SkewnessSE              Standard Error of Skewness
T3MS                    Type III Expected Mean Square Formula
T3test                  Test Type III SS using an error term other than
                        MSE
TTEST                   Independent two groups t-test comparable to
                        PROC TTEST
UCL                     Upper Confidence Limit
UNIV                    Univariate Descriptive Statistics
WhiteTest               White's Model Specification Test
addSigFieldLM           Add Acrobat-Reader signature fields to a report
                        PDF
af                      Convert some columns of a data.frame to factors
aov1                    ANOVA with Type I SS
aov2                    ANOVA with Type II SS
aov3                    ANOVA with Type III SS
aspirinCHD              An example dataset for meta-analysis - aspirin
                        in coronary heart disease
bk                      Beautify the output of knitr::kable
cSS                     Sum of Square with a Given Contrast Set
corFisher               Correlation test by Fisher's Z transformation
e1                      Get a Contrast Matrix for Type I SS
e2                      Get a Contrast Matrix for Type II SS
e3                      Get a Contrast Matrix for Type III SS
est                     Estimate Linear Functions
estmb                   Estimability Check
g2inv                   Generalized type 2 inverse matrix, g2 inverse
geoCV                   Geometric Coefficient of Variation in
                        percentage
geoMean                 Geometric Mean without NA
is.cor                  Is it a correlation matrix?
lfit                    Linear Fit
lr                      Linear Regression with g2 inverse
lr0                     Simple Linear Regressions with Each Independent
                        Variable
mtest                   Independent two groups t-test similar to PROC
                        TTEST with summarized input
pB                      Plot Confidence and Prediction Bands for Simple
                        Linear Regression
pD                      Diagnostic Plot for Regression
pResD                   Residual Diagnostic Plot for Regression
regD                    Regression of Conventional Way with Rich
                        Diagnostics
sasLM-package           'SAS' Linear Model
satt                    Satterthwaite Approximation of Variance and
                        Degrees of Freedom
seqBound                Sequential bounds for cumulative Z-test in
                        Group Sequential Design
seqCI                   Confidence interval with the last Z-value for a
                        group sequential design
signPDFLM               Digitally sign and verify a PDF report
tmtest                  Independent two means test similar to t.test
                        with summarized input
trimmedMean             Trimmed Mean
tsum                    Table Summary
tsum0                   Table Summary with 0 independent (x) variables
tsum1                   Table Summary with 1 independent (x) variable
tsum2                   Table Summary with 2 independent (x) variables
tsum3                   Table Summary with 3 independent (x) variables
vtest                   F-Test for the ratio of two groups' variances
writeMD5LM              Write the MD5 integrity manifest for an
                        installed package
ztest                   Test for the difference of two groups' means
