BinBam	BinBam
createReferenceSetFromCounts	createReferenceSetFromCounts
evalPerformance	evalPerformance
gcContent	gcContent
makeBinnedCountsFile	makeBinnedCountsFile
makeGCContentData	makeGCContentData
makeGCContentPerPos	makeGCContentPerPos
outcomes	outcomes
plotTestSample	plotTestSample
print.rapidr.ref	print.rapidr.ref
print.rapidr.test	print.rapidr.test
ReadBed	ReadBed
testUnknowns	testUnknowns
writeCleanedCountsFile	writeCleanedCountsFile
writeResultsToFile	writeResultsToFile
