alignBurstSeq           Align synced data with known burst sequence
applySync               Apply sync model to toa matrix to obtain synced
                        data
checkInp                Check consistency of 'inp' object obtained from
                        'getInp()'
checkInpSync            Check consistency of 'inp_sync' object obtained
                        from 'getInpSync()'
dat_align               Example data for showcasing yaps function
                        alignBurstSeq()
fineTuneSyncModel       Fine-tune an already fitted sync_model Wrapper
                        function to re-run getSyncModel() using the
                        same data, but excluding outliers. Note
                        dimensions of data might change if
                        eps_threshold results in empty rows in the
                        TOA-matrix.
getBbox                 Get a standard bounding box to impose spatial
                        constraints
getInp                  Get prepared inp-object for use in TMB-call
getInpSync              Get object inp for synchronization
getSyncCoverage         Quick overview to check if all hydros have
                        enough data within each offset period.
getSyncModel            Get sync model from inp_sync object obtained by
                        'getInpSync()'
getToaYaps              Build TOA matrix from synced data.table - also
                        do some pre-filtering of severe MP, pruning
                        loose ends etc
plotBbox                Graphical representation of spatial constraints
plotSyncModelCheck      Plot to check how well the sync model is
                        working
plotSyncModelHydros     Plot hydrophone positions. Especially useful if
                        some hydro re-positioned as part of the sync
                        model.
plotSyncModelResids     Plot residuals of sync_model to enable check of
                        model
plotYaps                Basic plots of yaps output
prepDetections          Experimental! Prepare detections data.table
                        from raw data - csv-files exported from vendor
                        software
runYaps                 Function to run TMB to estimate track
simHydros               Sim hydrophone array configuration
simTelemetryTrack       Simulate telemetry track based on known true
                        track obtained using simTrueTrack
simToa                  Sim TOA matrix for the supplied telemetryTrack
simTrueTrack            Simulate a known movement track for subsequent
                        estimation using YAPS
ssu1                    Test data from Florida Bay
tempToSs                Calculate speed of sound from water
                        temperature, salinity and depth Based on H.
                        Medwin (1975) Speed of sound in water: A simple
                        equation for realistic parameters.
                        (https://doi.org/10.1121/1.380790)
testYaps                Test YAPS core functionality
