R: Relationship Matrices for Diploid and Autopolyploid Species

# Relationship Matrices for Diploid and Autopolyploid Species

## Documentation for package ‘AGHmatrix’ version 3.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

Amatrix | Construction of Relationship Matrix A
AmatrixPolyCross | Construction of pedigree-based relationship matrix with parental guessing possibility
asciitonumber | Convert pedigree names to numeric indices using C++
datatreat | Organizes pedigree data in a chronological way using C++
expandAmatrix | Add new crosses to a current A matrix
filterpedigree | Filter the pedigree to keep only the genealogy of a subset of individuals
formatmatrix | Transform a matrix in 3 columns
Gmatrix | Construction of Relationship Matrix G
Hmatrix | Construction of Combined Relationship Matrix H
H_martini_blocks | Compute Martini block corrections (H11, H12, H21, H22 - A22)
Mcheck | Check and filter markers
missingdata | Survying on missing data
munoz_var_mean_by_Aclass | Compute var/mean of G by classes of rounded A, and fill varA/meanG
ped.mrode | Pedigree Data
ped.sol | Pedigree data for autopolyploid examples
snp.pine | Molecular data for diploid examples
snp.sol | Molecular data for autopolyploid examples