Package: BBNI
Title: Bayesian Inference of Boolean Genetic Networks
Version: 0.2.2
Authors@R: c(
    person(given = "Anson", family = "Li",
           email = "liyuanrui618@gmail.com",
           role = c("aut", "cre")),
    person(given = "Shengtong", family = "Han",
           email = "shengtong.han@marquette.edu",
           role = "aut")
    )
Description: Implements a fully Bayesian Markov chain Monte Carlo (MCMC) approach for inferring the topology and Boolean logic transition functions of gene regulatory networks from noisy, binary time-series expression data. Network structure and Boolean rules are sampled jointly from their posterior distribution, providing principled uncertainty quantification rather than a single point estimate. Method described in Han et al. (2014) <doi:10.1371/journal.pone.0115806>.
Depends: R (>= 4.1.0)
License: BSD_3_clause + file LICENSE
URL: https://anson-li8.github.io/BBNI/,
        https://github.com/anson-li8/BBNI
BugReports: https://github.com/anson-li8/BBNI/issues
Encoding: UTF-8
Language: en-US
Imports: stats, igraph
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
LazyData: true
Config/roxygen2/version: 8.1.0
NeedsCompilation: no
Packaged: 2026-08-17 16:53:18 UTC; Anson
Author: Anson Li [aut, cre],
  Shengtong Han [aut]
Maintainer: Anson Li <liyuanrui618@gmail.com>
Repository: CRAN
Date/Publication: 2026-08-19 19:20:12 UTC
Built: R 4.6.1; ; 2026-08-19 23:15:55 UTC; unix
