# Generated by roxygen2: do not edit by hand

S3method("[",intervs_mat)
S3method(print,gsynth.model)
S3method(rbind,intervs_mat)
export("%>%")
export(.misha)
export(gbins.quantiles)
export(gbins.summary)
export(gcis_decay)
export(gcluster.run)
export(gcompute_strands_autocorr)
export(gcor)
export(gdataset.example_path)
export(gdataset.info)
export(gdataset.load)
export(gdataset.ls)
export(gdataset.save)
export(gdataset.unload)
export(gdb.build_genome)
export(gdb.convert_to_indexed)
export(gdb.create)
export(gdb.create_genome)
export(gdb.create_linked)
export(gdb.export_fasta)
export(gdb.genome_info)
export(gdb.get_readonly_attrs)
export(gdb.info)
export(gdb.init)
export(gdb.init_examples)
export(gdb.install_gff3_converter)
export(gdb.install_gtf_converter)
export(gdb.install_intervals)
export(gdb.list_genomes)
export(gdb.mark_cache_dirty)
export(gdb.reload)
export(gdb.set_readonly_attrs)
export(gdb.unload)
export(gdir.cd)
export(gdir.create)
export(gdir.cwd)
export(gdir.rm)
export(gdist)
export(gextract)
export(ggenome.implant)
export(ggenome.transplant)
export(gintervals)
export(gintervals.2d)
export(gintervals.2d.all)
export(gintervals.2d.band_intersect)
export(gintervals.2d.convert_to_indexed)
export(gintervals.2d.intersect)
export(gintervals.2d.union)
export(gintervals.all)
export(gintervals.annotate)
export(gintervals.as_chain)
export(gintervals.attr.export)
export(gintervals.attr.get)
export(gintervals.attr.import)
export(gintervals.attr.set)
export(gintervals.canonic)
export(gintervals.chrom_sizes)
export(gintervals.convert_to_indexed)
export(gintervals.coverage_fraction)
export(gintervals.covered_bp)
export(gintervals.dataset)
export(gintervals.dbs)
export(gintervals.diff)
export(gintervals.exists)
export(gintervals.force_range)
export(gintervals.from_mat)
export(gintervals.from_strings)
export(gintervals.import_bed)
export(gintervals.import_genes)
export(gintervals.import_gff)
export(gintervals.import_vcf)
export(gintervals.intersect)
export(gintervals.is.bigset)
export(gintervals.liftover)
export(gintervals.load)
export(gintervals.load_chain)
export(gintervals.ls)
export(gintervals.mapply)
export(gintervals.mark_overlaps)
export(gintervals.neighbors)
export(gintervals.neighbors.directional)
export(gintervals.neighbors.downstream)
export(gintervals.neighbors.upstream)
export(gintervals.normalize)
export(gintervals.path)
export(gintervals.quantiles)
export(gintervals.random)
export(gintervals.rbind)
export(gintervals.rm)
export(gintervals.save)
export(gintervals.summary)
export(gintervals.to_mat)
export(gintervals.union)
export(gintervals.update)
export(giterator.cartesian_grid)
export(giterator.intervals)
export(glookup)
export(gpartition)
export(gquantiles)
export(grevcomp)
export(gsample)
export(gscreen)
export(gsegment)
export(gseq.comp)
export(gseq.extract)
export(gseq.kmer)
export(gseq.kmer.dist)
export(gseq.pwm)
export(gseq.pwm_edits)
export(gseq.read_homer)
export(gseq.read_jaspar)
export(gseq.read_meme)
export(gseq.rev)
export(gseq.revcomp)
export(gsetroot)
export(gsummary)
export(gsynth.bin_map)
export(gsynth.cell_merge)
export(gsynth.convert)
export(gsynth.forbid_kmer)
export(gsynth.load)
export(gsynth.random)
export(gsynth.replace_kmer)
export(gsynth.sample)
export(gsynth.save)
export(gsynth.score)
export(gsynth.train)
export(gtrack.2d.convert_to_indexed)
export(gtrack.2d.create)
export(gtrack.2d.import)
export(gtrack.2d.import_contacts)
export(gtrack.array.extract)
export(gtrack.array.get_colnames)
export(gtrack.array.import)
export(gtrack.array.set_colnames)
export(gtrack.attr.export)
export(gtrack.attr.get)
export(gtrack.attr.import)
export(gtrack.attr.set)
export(gtrack.convert)
export(gtrack.convert_to_indexed)
export(gtrack.copy)
export(gtrack.create)
export(gtrack.create_dense)
export(gtrack.create_dirs)
export(gtrack.create_pwm_energy)
export(gtrack.create_sparse)
export(gtrack.dataset)
export(gtrack.dbs)
export(gtrack.exists)
export(gtrack.export_bedgraph)
export(gtrack.export_bigwig)
export(gtrack.import)
export(gtrack.import_mappedseq)
export(gtrack.import_set)
export(gtrack.info)
export(gtrack.liftover)
export(gtrack.lookup)
export(gtrack.ls)
export(gtrack.modify)
export(gtrack.mv)
export(gtrack.path)
export(gtrack.rm)
export(gtrack.smooth)
export(gtrack.var.get)
export(gtrack.var.ls)
export(gtrack.var.rm)
export(gtrack.var.set)
export(gvtrack.array.slice)
export(gvtrack.clear)
export(gvtrack.create)
export(gvtrack.filter)
export(gvtrack.info)
export(gvtrack.iterator)
export(gvtrack.iterator.2d)
export(gvtrack.ls)
export(gvtrack.rm)
export(gwget)
export(gwilcox)
importFrom(magrittr,"%>%")
importFrom(stats,qnorm)
importFrom(stats,setNames)
importFrom(tools,SIGKILL)
importFrom(tools,pskill)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,write.table)
useDynLib(misha,C_gcis_decay)
useDynLib(misha,C_gcompute_strands_autocorr)
useDynLib(misha,C_gextract)
useDynLib(misha,C_gpartition)
useDynLib(misha,C_gquantiles)
useDynLib(misha,C_gsample)
useDynLib(misha,C_gscreen)
useDynLib(misha,C_gsegment)
useDynLib(misha,C_gwilcox)
useDynLib(misha,garrays_import)
useDynLib(misha,gbins_quantiles)
useDynLib(misha,gbins_summary)
useDynLib(misha,gbintransform)
useDynLib(misha,gchain2interv)
useDynLib(misha,gcheck_iterator)
useDynLib(misha,gcheck_vtrack)
useDynLib(misha,gcreate_pwm_energy)
useDynLib(misha,gcreate_pwm_energy_multitask)
useDynLib(misha,gcreate_test_computer2d_track)
useDynLib(misha,gextract_multitask)
useDynLib(misha,gfind_neighbors)
useDynLib(misha,gfind_tracks_n_intervals)
useDynLib(misha,gget_tracks_attrs)
useDynLib(misha,ginterv_intersectband)
useDynLib(misha,gintervals_chrom_sizes)
useDynLib(misha,gintervals_import_genes)
useDynLib(misha,gintervals_quantiles)
useDynLib(misha,gintervals_quantiles_multitask)
useDynLib(misha,gintervals_stats)
useDynLib(misha,gintervals_summary)
useDynLib(misha,gintervcanonic)
useDynLib(misha,gintervdiff)
useDynLib(misha,gintervintersect)
useDynLib(misha,gintervs_liftover)
useDynLib(misha,gintervsort)
useDynLib(misha,gintervunion)
useDynLib(misha,giterator_intervals)
useDynLib(misha,gmapply)
useDynLib(misha,gmapply_multitask)
useDynLib(misha,gquantiles_multitask)
useDynLib(misha,grbind)
useDynLib(misha,gscreen_multitask)
useDynLib(misha,gseqimport)
useDynLib(misha,gseqread)
useDynLib(misha,gset_tracks_attrs)
useDynLib(misha,gsmooth)
useDynLib(misha,gtrack_2d_import)
useDynLib(misha,gtrack_bintransform)
useDynLib(misha,gtrack_create_meta)
useDynLib(misha,gtrack_create_sparse)
useDynLib(misha,gtrack_create_track2d)
useDynLib(misha,gtrack_import_contacts)
useDynLib(misha,gtrack_intervals_load)
useDynLib(misha,gtrack_liftover)
useDynLib(misha,gtrack_modify)
useDynLib(misha,gtrackconvert)
useDynLib(misha,gtrackcor)
useDynLib(misha,gtrackcor_multitask)
useDynLib(misha,gtrackcreate)
useDynLib(misha,gtrackcreate_multitask)
useDynLib(misha,gtrackdist)
useDynLib(misha,gtrackdist_multitask)
useDynLib(misha,gtrackimport_mappedseq)
useDynLib(misha,gtrackimportwig)
useDynLib(misha,gtrackinfo)
useDynLib(misha,gtracksummary)
useDynLib(misha,gtracksummary_multitask)
