Type: Package
Package: misha
Title: Toolkit for Analysis of Genomic Data
Version: 5.11.23
Authors@R: c(
    person("Misha", "Hoichman", , "misha@hoichman.com", role = "aut"),
    person("Aviezer", "Lifshitz", , "aviezer.lifshitz@weizmann.ac.il", role = c("aut", "cre")),
    person("Eitan", "Yaffe", , "eitan.yaffe@weizmann.ac.il", role = "aut"),
    person("Amos", "Tanay", , "amos.tanay@weizmann.ac.il", role = "aut"),
    person("Weizmann Institute of Science", role="cph")
  )
Description: A toolkit for analysis of genomic data. The 'misha' package
    implements an efficient data structure for storing genomic data, and
    provides a set of functions for data extraction, manipulation and
    analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay
    (2011) <doi:10.1038/ng.947>. 
License: MIT + file LICENSE
URL: https://tanaylab.github.io/misha/,
        https://github.com/tanaylab/misha
BugReports: https://github.com/tanaylab/misha/issues
Depends: R (>= 3.0.0)
Imports: magrittr, curl, digest, ps, parallel, utils, tools, yaml
SystemRequirements: samtools (>= 1.0; optional, required only for BAM
        input), bedGraphToBigWig or wigToBigWig from UCSC (optional,
        required only for bigWig export; available as the bioconda
        package ucsc-bedgraphtobigwig)
Suggests: data.table, dplyr, glue, knitr, readr, rmarkdown, spelling,
        stats, stringr, testthat (>= 3.0.0), tibble, withr
Config/testthat/edition: 3
Config/testthat/start-first: liftover, multifasta-import
Encoding: UTF-8
Language: en-US
LazyLoad: yes
NeedsCompilation: yes
OS_type: unix
VignetteBuilder: knitr, rmarkdown
Config/roxygen2/version: 8.0.0
Packaged: 2026-08-24 12:59:25 UTC; aviezerl
Author: Misha Hoichman [aut],
  Aviezer Lifshitz [aut, cre],
  Eitan Yaffe [aut],
  Amos Tanay [aut],
  Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Repository: CRAN
Date/Publication: 2026-08-24 13:30:02 UTC
Built: R 4.6.1; aarch64-apple-darwin23; 2026-08-24 17:47:56 UTC; unix
Archs: misha.so.dSYM
