dowser-package	dowser-package
airrClone	airrClone-class
airrClone-class	airrClone-class
BiopsyTrees	BiopsyTrees
bootstrapTrees	bootstrapTrees
buildAllClonalGermlines	buildAllClonalGermlines
buildBeast	buildBeast
buildClonalGermline	buildClonalGermline
buildGermline	buildGermline
buildIgphyml	buildIgphyml
buildPhylo	buildPhylo
buildPML	buildPML
buildPratchet	buildPratchet
buildRAxML	buildRAxML
calcRF	calcRF
checkDivergence	checkDivergence
checkNodeDivergences	checkNodeDivergences
collapseNodes	collapseNodes
colorTrees	colorTrees
condenseTrees	condenseTrees
correlationTest	correlationTest
createAllGermlines	createAllGermlines
createGermlines	createGermlines
create_alignment	create_alignment
create_height_prior	create_height_prior
create_max_height_prior	create_max_height_prior
create_MRCA_prior_germline	create_MRCA_prior_germline
create_MRCA_prior_observed	create_MRCA_prior_observed
create_root_freqs	create_root_freqs
create_starting_tree	create_starting_tree
create_traitset	create_traitset
dfToFasta	dfToFasta
downsampleClone	downsampleClone
dowser	dowser
dowserObjectEquivalent	dowserObjectEquivalent
ExampleAirr	ExampleAirr
ExampleAirrTyCHE	ExampleAirrTyCHE
ExampleClones	ExampleClones
ExampleDbChangeo	ExampleDbChangeo
ExampleMixedClones	ExampleMixedClones
ExampleMixedDb	ExampleMixedDb
exportTrees	exportTrees
filterCombs	filterCombs
filterPartialSeqs	filterPartialSeqs
findSwitches	findSwitches
formatClones	formatClones
getAllSeqs	getAllSeqs
getBootstraps	getBootstraps
getDiffPoint	getDiffPoint
getDiffPoints	getDiffPoints
getDivergence	getDivergence
getGermline	getGermline
getHeightsAndLengths	getHeightsAndLengths
getNodeSeq	getNodeSeq
getPalette	getPalette
getSeq	getSeq
getSeqPath	getSeqPath
getSkylines	getSkylines
getSubclones	getSubclones
getSubTaxa	getSubTaxa
getTimeTrees	getTimeTrees
getTimeTreesIterate	getTimeTreesIterate
getTrees	getTrees
getTreesAndUCAs	getTreesAndUCAs
installPythonDependencies	installPythonDependencies
IsotypeTrees	IsotypeTrees
makeAirrClone	makeAirrClone
makeModelFile	makeModelFile
makeSkyline	makeSkyline
mapSubtrees	mapSubtrees
maskCodons	maskCodons
maskSequences	maskSequences
plotMSA	plotMSA
plotSkylines	plotSkylines
plotTrees	plotTrees
readBEAST	readBEAST
readFasta	readFasta
readIMGT	readIMGT
readLineages	readLineages
readModelFile	readModelFile
readTreesJSON	readTreesJSON
reconIgPhyML	reconIgPhyML
rerootTree	rerootTree
resolveLightChains	resolveLightChains
resolvePolytomies	resolvePolytomies
runCorrelationTest	runCorrelationTest
sampleCloneMultiGroup	sampleCloneMultiGroup
sampleClones	sampleClones
scaleBranches	scaleBranches
setNodeDivergences	setNodeDivergences
stitchRegions	stitchRegions
stitchVDJ	stitchVDJ
stopCodonCheck	stopCodonCheck
testPS	testPS
testSC	testSC
testSP	testSP
TimeTrees	TimeTrees
treesEquivalent	treesEquivalent
treesToPDF	treesToPDF
writeCloneSequences	writeCloneSequences
writeFasta	writeFasta
writeLineageFile	writeLineageFile
writeTreesJSON	writeTreesJSON
write_clones_to_xmls	write_clones_to_xmls
write_clone_to_xml	write_clone_to_xml
