# Generated by roxygen2: do not edit by hand

export(abundance)
export(add)
export(assign)
export(clear)
export(copy_dataset)
export(count)
export(export_dataset)
export(get_bin_types)
export(has_sample)
export(has_sequence_strings)
export(import_dataset)
export(is_aligned)
export(is_equal)
export(load_dataset)
export(miseq_sop_example)
export(names)
export(new_dataset)
export(new_reference)
export(read_dada2)
export(read_fasta)
export(read_mothur)
export(read_mothur_cons_taxonomy)
export(read_mothur_count)
export(read_mothur_list)
export(read_mothur_oligos)
export(read_mothur_rabund)
export(read_mothur_shared)
export(read_mothur_taxonomy)
export(read_phyloseq)
export(read_qiime2)
export(read_qiime2_feature_table)
export(read_qiime2_metadata)
export(read_qiime2_taxonomy)
export(report)
export(save_dataset)
export(sort_dataframe)
export(strollur)
export(strollur_example)
export(summary)
export(unpack_qiime2_artifact)
export(write_fasta)
export(write_mothur)
export(write_mothur_cons_taxonomy)
export(write_mothur_count)
export(write_mothur_design)
export(write_mothur_list)
export(write_mothur_rabund)
export(write_mothur_shared)
export(write_phyloseq)
export(write_taxonomy)
export(xdev_abundance)
export(xdev_add_references)
export(xdev_add_report)
export(xdev_add_sequences)
export(xdev_assign_bin_representative_sequences)
export(xdev_assign_bin_taxonomy)
export(xdev_assign_bins)
export(xdev_assign_sequence_abundance)
export(xdev_assign_sequence_taxonomy)
export(xdev_assign_sequence_taxonomy_tidy)
export(xdev_assign_treatments)
export(xdev_count)
export(xdev_get_abundances_by_sample)
export(xdev_get_by_sample)
export(xdev_get_list_vector)
export(xdev_get_sequences)
export(xdev_has_sequence_taxonomy)
export(xdev_merge_bins)
export(xdev_merge_sequences)
export(xdev_names)
export(xdev_remove_bins)
export(xdev_remove_lineages)
export(xdev_remove_samples)
export(xdev_remove_sequences)
export(xdev_report)
export(xdev_set_abundance)
export(xdev_set_abundances)
export(xdev_set_dataset_name)
export(xdev_set_sequences)
import(cli)
importFrom(R.utils,decompressFile)
importFrom(R6,R6Class)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(ape,as.DNAbin)
importFrom(ape,dist.dna)
importFrom(ape,drop.tip)
importFrom(ape,nj)
importFrom(ape,read.tree)
importFrom(dplyr,across)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,reframe)
importFrom(dplyr,relocate)
importFrom(dplyr,summarise)
importFrom(dplyr,where)
importFrom(methods,new)
importFrom(microseq,readFasta)
importFrom(rbiom,read_biom)
importFrom(readr,read_csv)
importFrom(readr,read_tsv)
importFrom(stats,na.omit)
importFrom(stats,reshape)
importFrom(tidyr,pivot_wider)
importFrom(utils,modifyList)
importFrom(utils,read.table)
importFrom(utils,unzip)
importFrom(waldo,compare)
importFrom(yaml,read_yaml)
useDynLib(strollur, .registration = TRUE)
