# Analysis of Regionalization Patterns in Serially Homologous Structures

## Documentation for package ‘MorphoRegions’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

addregions | Fit segmented regression models for all combinations of breakpoints
alligator | Measurements from the vertebral column of an alligator
calcBPvar | Calculate variability of breakpoints
calcmodel | Calculate results of a single segmented regression model
calcregions | Fit segmented regression models for all combinations of breakpoints
dolphin | Measurements from the vertebral column of a dolphin
modelperf | Assess model performance
modelperf.regions_pco | Assess model performance
modelperf.regions_results_single | Assess model performance
modelperf.regions_sim | Assess model performance
modelselect | Select the best models
modelsupport | Evaluate model support
musm | Measurements from the vertebral column of a mouse
ncombos | Fit segmented regression models for all combinations of breakpoints
PCOload | Calculate PCO loadings
PCOselect | Select PCO scores
plot.regions_pco | Plot PC axes
plot.regions_pco_load | Calculate PCO loadings
plot.regions_pco_select | Select PCO scores
plot.regions_sim | Simulate regions data
plotsegreg | Plot a segmented regression model
plotsegreg.regions_pco | Plot a segmented regression model
plotsegreg.regions_results_single | Plot a segmented regression model
plotsegreg.regions_sim | Plot a segmented regression model
plotvertmap | Plot a vertebra map
porpoise | Measurements from the vertebral column of three porpoises
porpoise1 | Measurements from the vertebral column of three porpoises
porpoise2 | Measurements from the vertebral column of three porpoises
porpoise3 | Measurements from the vertebral column of three porpoises
process_gmPC | Process vertebral measurements and PC scores of 2D or 3D geometric morphometric data
process_measurements | Process vertebral measurements
process_PC | Process vertebral measurements and PC scores of traditional morphometric data
seal_gmm | Geometric morphometric data and PC scores of the vertebral column a seal
simregions | Simulate regions data
subsample | Subsample a dataset
summary.regions_pco_select | Select PCO scores
summary.regions_results | Fit segmented regression models for all combinations of breakpoints
svdPCO | Calculate PCO (principal co-ordinates analysis) based on SVD
wolves_gmm | Geometric morphometric data and PC scores of the vertebral column two wolves