* using log directory 'd:/Rcompile/CRANpkg/local/4.7/qtl2convert.Rcheck'
* using R Under development (unstable) (2026-06-04 r90104 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-06-05 19:07:24 UTC
* checking for file 'qtl2convert/DESCRIPTION' ... OK
* this is package 'qtl2convert' version '0.32'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'qtl2convert' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking examples ... [5s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [4s] ERROR
  Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > test_check("qtl2convert")
  Loading required package: qtl2convert
  Saving _problems/test-probs_qtl_to_qtl2-18.R
  Saving _problems/test-probs_qtl_to_qtl2-40.R
  Saving _problems/test-probs_qtl_to_qtl2-50.R
  Saving _problems/test-probs_qtl_to_qtl2-61.R
  Saving _problems/test-probs_qtl_to_qtl2-71.R
  Saving _problems/test-probs_qtl_to_qtl2-82.R
  Saving _problems/test-probs_qtl_to_qtl2-93.R
  Saving _problems/test-probs_qtl_to_qtl2-104.R
  [ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • this test only run locally (6): 'test-count_unique_geno.R:22:5',
    'test-cross2_do_to_genail8.R:4:5', 'test-encode_geno.R:35:5',
    'test-find_consensus_geno.R:17:5', 'test-find_unique_geno.R:26:5',
    'test-probs_doqtl_to_qtl2.R:36:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-probs_qtl_to_qtl2.R:18:5'): probs_qtl_to_qtl2 works for backcross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "6": Attributes: < Length mismatch: comparison on first 2 components >
  ── Failure ('test-probs_qtl_to_qtl2.R:40:5'): probs_qtl_to_qtl2 works for intercross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "8": Attributes: < Length mismatch: comparison on first 2 components >
  ── Failure ('test-probs_qtl_to_qtl2.R:50:5'): probs_qtl_to_qtl2 works for intercross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "8": Attributes: < Length mismatch: comparison on first 2 components >
  ── Failure ('test-probs_qtl_to_qtl2.R:61:5'): probs_qtl_to_qtl2 works for intercross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "8": Attributes: < Length mismatch: comparison on first 2 components >
  ── Failure ('test-probs_qtl_to_qtl2.R:71:5'): probs_qtl_to_qtl2 works for intercross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "8": Attributes: < Length mismatch: comparison on first 2 components >
  ── Failure ('test-probs_qtl_to_qtl2.R:82:5'): probs_qtl_to_qtl2 works for intercross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "8": Attributes: < Length mismatch: comparison on first 2 components >
  ── Failure ('test-probs_qtl_to_qtl2.R:93:5'): probs_qtl_to_qtl2 works for intercross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "8": Attributes: < Length mismatch: comparison on first 2 components >
  ── Failure ('test-probs_qtl_to_qtl2.R:104:5'): probs_qtl_to_qtl2 works for intercross ──
  Expected `result$probs` to equal `pr`.
  Differences:
  Component "1": Attributes: < Length mismatch: comparison on first 2 components >
  Component "8": Attributes: < Length mismatch: comparison on first 2 components >
  
  [ FAIL 8 | WARN 0 | SKIP 6 | PASS 41 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 ERROR