ICCstats                Intraclass correlation statistics from an
                        lm.rrpp model fits
PlethCinHoff            Plethodon comparative SVL data
PlethMorph              Plethodon comparative morphological data
Pupfish                 Landmarks on pupfish
PupfishHeads            Landmarks on pupfish heads
PupfishMR               Experimental metabolic rate data from pupfish
QRforX                  QR decomposition of linear model design
                        matrices
ReptAbund               Reptile Abundance Data in Western Australia
add.trajectories        Plot Function for RRPP
add.tree                Plot tool to add phylogenetic trees to
                        ordination plots
anova.lm.rrpp           ANOVA for lm.rrpp model fits
anova.measurement.error
                        ANOVA for lm.rrpp model fits used in
                        measurement.error
betaTest                Test of beta parameters for lm.rrpp model fits
classify                Deprecated functions in RRPP
coef.lm.rrpp            coef for lm.rrpp model fits
coef.lmm.rrpp           coef for lmm.rrpp model fits
convert2ggplot          Convert RRPP plots to ggplot objects
effect.size             Obtain Effect-size from a vector of values
fishy                   Simulated Fish Data for Measurement Error
                        Analysis
fitted.lm.rrpp          Extract fitted values
fixef.lmm.rrpp          fixef for lmm.rrpp model fits
flower                  Flower Production and Temperature
focusMEonSubjects       Plot Function for RRPP
getANOVAStats           Utility Function for RRPP
getModelCov             Utility Function for RRPP
getModels               Utility Function for RRPP
getPermInfo             Utility Function for RRPP
getResCov               Utility Function for RRPP
getTerms                Utility Function for RRPP
interSubVar             Reveal the inter-subject variability from a
                        measurement error analysis
kcomp                   K-component analysis
lm.rrpp                 Linear Model Evaluation with a Randomized
                        Residual Permutation Procedure
lm.rrpp.ws              Linear Model Evaluation with RRPP performed
                        within subjects
lmm.rrpp                Mixed Linear Model Evaluation with RRPP
                        performed within subjects
logLik.lm.rrpp          Calculate the log-likelihood of a lm.rrpp fit
looCV                   Diagnostic cross-validation tool including
                        ordination based on fitted values
looCV_table             Table for looCV comparisons
lr_test                 Likelihood ratio test for a linear model, based
                        on RRPP
mahal_dist              Calculate the pairwise Mahalanobis distances
                        between observations
mammalHR                Mammal Home Range Data
mammalHRphy             Phylogenetic Data for the Mammal Home Range
                        Data
manova.update           MANOVA update for lm.rrpp model fits
measurement.error       Evaluation of measurement error for two or more
                        multivariate measurements, for common research
                        subjects
model.comparison        Model Comparisons, in terms of the
                        log-likelihood, covariance trace, or Z-score.
model.frame.lm.rrpp     Extract model frame from a lm.rrpp object
model.matrix.lm.rrpp    Extract the model design matrix from an lm.rrpp
                        object
motionpaths             Simulated motion paths
na.omit.rrpp.data.frame
                        Handle missing values in rrpp.data.frame
                        objects
ordinate                Ordination tool for data aligned to another
                        matrix
pairwise                Pairwise comparisons of lm.rrpp fits
pairwise.model.Z        Pairwise comparisons of model effects
phytoplankton           Phytoplankton Biomass and Eutrophication
plot.interSubVar        Plot Function for RRPP
plot.kcomp              Plot Function for RRPP
plot.lm.rrpp            Plot Function for RRPP
plot.looCV              Plot Function for RRPP
plot.measurement.error
                        Plot Function for RRPP
plot.model.comparison   Plot Function for RRPP
plot.ordinate           Plot Function for RRPP
plot.predict.lm.rrpp    Plot Function for RRPP
plot.trajectory.analysis
                        Plot Function for RRPP
podarcis                Podarcis Wall Lizards from the Mediterranean
                        Basin
powerTrans              Power Transformation
predict.lm.rrpp         predict for lm.rrpp model fits
prep.lda                Linear discriminant function for lm.rrpp model
                        fits
print.ICCstats          Print/Summary Function for RRPP
print.anova.lm.rrpp     Print/Summary Function for RRPP
print.betaTest          Print/Summary Function for RRPP
print.coef.lm.rrpp      Print/Summary Function for RRPP
print.kcomp             Print/Summary Function for RRPP
print.lm.rrpp           Print/Summary Function for RRPP
print.looCV             Print/Summary Function for RRPP
print.lr_test           Print/Summary Function for RRPP
print.measurement.error
                        Print/Summary Function for RRPP
print.model.comparison
                        Print/Summary Function for RRPP
print.ordinate          Print/Summary Function for RRPP
print.pairwise          Print/Summary Function for RRPP
print.pairwise.model.Z
                        Print/Summary Function for RRPP
print.predict.lm.rrpp   Print/Summary Function for RRPP
print.summary.betaTest
                        Print/Summary Function for RRPP
print.summary.lm.rrpp   Print/Summary Function for RRPP
print.summary.manova.lm.rrpp
                        Print/Summary Function for RRPP
print.summary.ordinate
                        Print/Summary Function for RRPP
print.summary.pairwise
                        Print/Summary Function for RRPP
print.summary.trajectory.analysis
                        Print/Summary Function for RRPP
print.trajectory.analysis
                        Print/Summary Function for RRPP
pval                    Obtain P-value from a vector of statistics
ranef.lmm.rrpp          ranef for lmm.rrpp model fits
residuals.lm.rrpp       Extract residuals
reveal.model.designs    Reveal model designs used in lm.rrpp fit
rrpp.data.frame         Create a data frame for lm.rrpp analysis
scaleCov                Scaling of a Covariance Matrix
snakeHS                 Snake Head Size and Regional Variation
summary.ICCstats        Print/Summary Function for RRPP
summary.anova.lm.rrpp   Print/Summary Function for RRPP
summary.betaTest        Print/Summary Function for RRPP
summary.coef.lm.rrpp    Print/Summary Function for RRPP
summary.kcomp           Print/Summary Function for RRPP
summary.lm.rrpp         Print/Summary Function for RRPP
summary.looCV           Print/Summary Function for RRPP
summary.lr_test         Print/Summary Function for RRPP
summary.manova.lm.rrpp
                        Print/Summary Function for RRPP
summary.measurement.error
                        Print/Summary Function for RRPP
summary.model.comparison
                        Print/Summary Function for RRPP
summary.ordinate        Print/Summary Function for RRPP
summary.pairwise        Print/Summary Function for RRPP
summary.pairwise.model.Z
                        Print/Summary Function for RRPP
summary.predict.lm.rrpp
                        Print/Summary Function for RRPP
summary.trajectory.analysis
                        Print/Summary Function for RRPP
terms.lm.rrpp           Extract the terms from an lm.rrpp object
trajectory.analysis     Quantify and compare shape change trajectories
vec.cor.matrix          Support function for RRPP
