* using log directory 'd:/Rcompile/CRANpkg/local/4.7/stLMM.Rcheck'
* using R Under development (unstable) (2026-08-31 r90457 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-09-01 23:35:27 UTC
* checking for file 'stLMM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'stLMM' version '0.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'stLMM' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 14.3.0'
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking C++ specification ... INFO
  specified C++17
* checking installed package size ... INFO
  installed size is  9.5Mb
  sub-directories of 1Mb or more:
    data      2.8Mb
    extdata   4.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [4s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [186s] ERROR
  Running 'testthat.R' [186s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(stLMM)
  
  Attaching package: 'stLMM'
  
  The following object is masked from 'package:stats':
  
      resid
  
  The following object is masked from 'package:utils':
  
      recover
  
  > 
  > test_check("stLMM")
  Saving _problems/test-offsets-133.R
  Saving _problems/test-predict-45.R
  Saving _problems/test-predict-367.R
  Saving _problems/test-predict-553.R
  [ FAIL 4 | WARN 11 | SKIP 0 | PASS 1425 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-offsets.R:133:3'): NB offset works with recovered CAR effects ──
  Error in `asMethod(object)`: lazy-load database 'D:/temp/2026_09_01_01_50_00_22259/Rtmpau1wNz/RLIBS_440cc1b04688f/Matrix/R/Matrix.rdb' is corrupt
  Backtrace:
      ▆
   1. └─stLMM::car_graph(adj) at test-offsets.R:133:3
   2.   └─Matrix::Matrix(graph, sparse = TRUE)
   3.     └─methods::as(data, if (sparse) "CsparseMatrix" else "unpackedMatrix")
   4.       └─Matrix (local) asMethod(object)
  ── Error ('test-predict.R:45:3'): predict.stLMM works for grouped random-effect fits without recovery ──
  Error in `Matrix(e1)`: lazy-load database 'D:/temp/2026_09_01_01_50_00_22259/Rtmpau1wNz/RLIBS_440cc1b04688f/Matrix/R/Matrix.rdb' is corrupt
  Backtrace:
      ▆
   1. ├─manual + ... at test-predict.R:45:3
   2. └─manual + ...
   3.   ├─methods::callGeneric(Matrix(e1), e2)
   4.   │ └─base::eval(call, parent.frame())
   5.   │   └─base::eval(call, parent.frame())
   6.   └─Matrix::Matrix(e1)
  ── Error ('test-predict.R:367:3'): predict.stLMM_recovery combines grouped random effects with SVC NNGP new nodes ──
  Error in `Matrix(e1)`: lazy-load database 'D:/temp/2026_09_01_01_50_00_22259/Rtmpau1wNz/RLIBS_440cc1b04688f/Matrix/R/Matrix.rdb' is corrupt
  Backtrace:
      ▆
   1. ├─manual + ... at test-predict.R:367:3
   2. └─manual + ...
   3.   ├─methods::callGeneric(Matrix(e1), e2)
   4.   │ └─base::eval(call, parent.frame())
   5.   │   └─base::eval(call, parent.frame())
   6.   └─Matrix::Matrix(e1)
  ── Error ('test-predict.R:553:3'): predict.stLMM_recovery rebuilds grouped random-effect design for newdata ──
  Error in `Matrix(e1)`: lazy-load database 'D:/temp/2026_09_01_01_50_00_22259/Rtmpau1wNz/RLIBS_440cc1b04688f/Matrix/R/Matrix.rdb' is corrupt
  Backtrace:
      ▆
   1. ├─manual + ... at test-predict.R:553:3
   2. └─manual + ...
   3.   ├─methods::callGeneric(Matrix(e1), e2)
   4.   │ └─base::eval(call, parent.frame())
   5.   │   └─base::eval(call, parent.frame())
   6.   └─Matrix::Matrix(e1)
  
  [ FAIL 4 | WARN 11 | SKIP 0 | PASS 1425 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 1 ERROR