# Missing Person Identification Tools

## Documentation for package ‘mispitools’ version 2.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

mispitools-package | mispitools: Missing Person Identification Tools
Argentina | STR Allele Frequencies from Argentina
Asia | STR Allele Frequencies from Asian Populations
as_lr_dist | Coerce to a Likelihood-Ratio Distribution Object
Austria | STR Allele Frequencies from Austria
belief_trajectory | Compute a belief trajectory from sequential evidence
binary_belief_trajectory | Compute a binary belief trajectory from per-marker likelihood ratios
BosniaHerz | STR Allele Frequencies from Bosnia and Herzegovina
calibrate_concentration_cutoff | Calibrate pedigree-specific concentration cutoff
China | STR Allele Frequencies from China
compute_conditioned_prop | Compute Conditioned Proportions for Pigmentation Traits
compute_reference_prop | Compute Reference Population Proportions for Pigmentation Traits
concentration_index | Concentration index of per-step evidence contributions
concentration_index_positive | Inclusion-fragility concentration index (positive weights only)
cpt_missing_person | Missing Person-Based Conditional Probability Table
cpt_population | Population-Based Conditional Probability Table
decision_threshold | Compute Optimal Decision Threshold
entropy_log10 | Shannon entropy in base-10 (bans)
error_matrix_hair | Hair Color Error/Confusion Matrix
Europe | STR Allele Frequencies from Europe
familias_trajectory | Belief trajectory metrics from a 'Familias::FamiliasPosterior' result
fragility_report | Per-case fragility report
get_allele_freqs | Get Allele Frequencies in pedtools Format
herfindahl_index | Herfindahl-Hirschman concentration of evidence contributions
Japan | STR Allele Frequencies from Japan
kl_divergence_log10 | Kullback-Leibler divergence in base-10 (bans)
leave_one_out | Leave-one-out fragility analysis of evidence contributions
lr_age | Likelihood Ratio for Age Variable
lr_birthdate | Likelihood Ratio for Birth Date
lr_combine | Combine Likelihood Ratios from Multiple Sources
lr_compute_pigmentation | Compute Likelihood Ratios for Pigmentation Traits
lr_distribution | Composed likelihood-ratio distribution over a marker profile
lr_hair_color | Likelihood Ratio for Hair Color
lr_pigmentation | Simulate LR Distributions for Pigmentation Traits
lr_sensitivity | Sensitivity Analysis for Likelihood Ratios
lr_sex | Likelihood Ratio for Biological Sex
lr_to_dataframe | Convert Genetic LR Simulations to Data Frame
marker_model | Marker model (S3)
mispitools | mispitools: Missing Person Identification Tools
mispitools_app | Comprehensive Shiny App for Missing Person Identification
nongenetic_feature | Non-genetic feature model (S3)
per_marker_kl | Per-marker bidirectional Kullback-Leibler divergence and expected log10 LR
per_marker_kl_profile | Per-marker bidirectional KL across a marker profile
plot.lr_dist | Plot a Likelihood-Ratio Distribution
plot_cpt | Plot Conditional Probability Tables Comparison
plot_decision_curve | Plot Decision Curve (FPR vs FNR)
plot_lr_distribution | Plot Likelihood Ratio Distributions
print.marker_model | Print method for marker_model
print.nongenetic_feature | Print method for nongenetic_feature
quantile.lr_dist | Quantiles of a likelihood-ratio distribution
shannon_concentration | Shannon-entropy-based concentration of evidence contributions
sim_lr_genetic | Simulate Likelihood Ratios from Genetic Data
sim_lr_prelim | Simulate Likelihood Ratios from Preliminary Investigation Data
sim_mp_prelim | Simulate Preliminary Investigation Data for Missing Persons
sim_poi_prelim | Simulate Preliminary Investigation Data for Persons of Interest
sim_reference_pop | Simulate Reference Population with Pigmentation Traits
summary.lr_dist | Summarise a Likelihood-Ratio Distribution
threshold_rates | Compute Error Rates at a Specific Threshold
trajectory_metrics | Trajectory metrics from a belief trajectory matrix
USA | STR Allele Frequencies from United States