Package: nQuack
Title: Predicting Ploidal Level from Sequence Data
Description: Predicts ploidal level from sequence data using site-based heterozygosity and a mixture models approach. See Gaynor et al. (2024) <doi:10.1002/aps3.11606>.
Version: 1.0.4
Authors@R: c(
    person(given = "Michelle L.", family = "Gaynor",  email= "shellyleegaynor@gmail.com", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-3912-6079")))
Encoding: UTF-8
RoxygenNote: 7.3.3
Suggests: knitr, dplyr, kableExtra, rmarkdown
Imports: Rcpp (>= 1.0.11), RcppArmadillo (>= 14.0.2-1), truncdist,
        data.table, foreach, future, parallel, doParallel, extraDistr,
        RcppProgress, httr2, magrittr
LinkingTo: Rcpp, RcppArmadillo, extraDistr, RcppProgress
SystemRequirements: C++17 samtools (>= 1.10)
Depends: R (>= 4.1.0)
LazyData: true
License: GPL (>= 2)
VignetteBuilder: knitr
Maintainer: Michelle L. Gaynor <shellyleegaynor@gmail.com>
URL: http://mlgaynor.com/nQuack/, https://github.com/mgaynor1/nQuack/
BugReports: https://github.com/mgaynor1/nQuack/issues
Config/testthat/edition: 3
NeedsCompilation: yes
Packaged: 2026-07-07 13:46:08 UTC; shellygaynor
Author: Michelle L. Gaynor [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-3912-6079>)
Repository: CRAN
Date/Publication: 2026-07-16 12:50:19 UTC
Built: R 4.7.0; x86_64-w64-mingw32; 2026-09-01 03:31:39 UTC; windows
Archs: x64
