avonet_subset           AVONET morphological trait data (subset)
crosswalk_birdlife_birdtree
                        BirdLife-BirdTree taxonomy crosswalk
delhey_subset           Plumage lightness data (subset)
mammal_amniote_example
                        Amniote-style mammal life-history sample
mammal_pantheria_example
                        PanTHERIA-style mammal life-history sample
mammal_tetrapodtraits_example
                        TetrapodTraits-style mammal sample
mammal_tree_example     Mammal phylogenetic tree (example)
nesttrait_subset        Nest trait data (subset)
pr_cite_tree            Format the citations for a tree result
pr_date_tree            Time-calibrate a topology using the DateLife
                        chronogram database
pr_extract_tips         Extract tip labels from a phylogenetic tree
pr_get_tree             Retrieve a candidate phylogeny for a species
                        list
pr_get_tree_status      Report the install status of every
                        'pr_get_tree()' backend
pr_normalize_names      Normalise scientific names to a canonical form
pr_phylo_cor            Phylogenetic correlation matrix from a tree
pr_tree_cache_clear     Clear the local tree-retrieval cache
pr_tree_cache_dir       Get or set the local tree-retrieval cache
                        directory
pr_tree_cache_status    Show the contents of the local tree-retrieval
                        cache
pr_tree_compare         Compare two or more phylogenetic trees
reconcile_apply         Apply a reconciliation to produce an aligned
                        data-tree pair
reconcile_augment       Graft missing species onto a phylogenetic tree
                        (genus-level placement)
reconcile_crosswalk     Convert a published taxonomy crosswalk into an
                        overrides table
reconcile_crosswalk_supplement
                        Apply a taxonomy crosswalk as a post-baseline
                        supplement
reconcile_data          Reconcile species names between two datasets
reconcile_diff          Diff two reconciliations to see what changed
reconcile_export        Write an aligned dataset, tree, and mapping
                        table to disk
reconcile_mapping       Extract the per-name mapping table from a
                        reconciliation
reconcile_merge         Merge two reconciled datasets
reconcile_multi         Reconcile several datasets against one
                        phylogenetic tree
reconcile_override      Manually override a single name in a
                        reconciliation
reconcile_override_batch
                        Apply many manual corrections to a
                        reconciliation at once
reconcile_plot          Plot the match composition of a reconciliation
reconcile_report        Write a self-contained HTML reconciliation
                        report
reconcile_review        Interactively review reconciliation matches
reconcile_splits_lumps
                        Flag taxonomic splits and lumps in a
                        reconciliation
reconcile_suggest       Suggest near-miss matches for unresolved
                        species
reconcile_summary       Print a reconciliation summary to the console
reconcile_to_trees      Reconcile one dataset against multiple
                        phylogenetic trees
reconcile_tree          Reconcile species names between a dataset and a
                        phylogenetic tree
reconcile_trees         Reconcile tip labels between two phylogenetic
                        trees
tree_clements25         Clements 2025 phylogenetic tree (subset)
tree_jetz               Jetz (2012) phylogenetic tree (subset)
