Package: prozor
Type: Package
Title: Minimal Protein Set Explaining Peptide Spectrum Matches
Version: 0.3.1
Authors@R: c(person("Witold", "Wolski",
        email = c("wewolski@gmail.com"),
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-6468-120X")))
Description: Determine minimal protein set explaining
    peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants.
    Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein
    level. Computing dynamic swath window sizes based on MS1 or MS2 signal distributions.
License: GPL-3
Imports: AhoCorasickTrie, docopt, Matrix, methods, purrr, readr, rlang,
        seqinr, stringr, dplyr
Suggests: knitr, rmarkdown,
URL: https://github.com/protviz/prozor
BugReports: https://github.com/protviz/prozor/issues
Repository: CRAN
RoxygenNote: 7.1.2
Depends: R (>= 3.1.0)
VignetteBuilder: knitr
Collate: 'annotatePeptides.R' 'readjustWindow.R' 'cdsw.R'
        'computeFDR.R' 'createDecoyDB.R' 'create_fgcz_fasta_db.R'
        'greedy.R' 'hello.R' 'loadContaminantsFasta.R'
        'prepareMatrix.R' 'readFasta.R' 'removeSignalPeptides.R'
        'reverseSeq.R' 'writeFasta.R' 'zzz.R'
biocViews: Software, MassSpectrometry, Proteomics,
        ExperimentHubSoftware,
NeedsCompilation: no
Packaged: 2021-12-07 11:48:58 UTC; wolski
Author: Witold Wolski [aut, cre] (<https://orcid.org/0000-0002-6468-120X>)
Maintainer: Witold Wolski <wewolski@gmail.com>
Date/Publication: 2021-12-07 16:20:02 UTC
Built: R 4.6.0; ; 2026-01-12 04:30:01 UTC; windows
