Package: exmort
Title: All-Cause and Excess Mortality Calculator
Version: 0.1.0
Authors@R: c(
    person("Shanlong", "Ding", email = "dings@who.int",
           role = c("aut", "cre")),
    person("World Health Organization Regional Office for the Western Pacific",
           role = c("cph", "fnd")))
Description: An interactive 'shiny' application that estimates all-cause
    mortality and excess mortality from country-level weekly or monthly death
    counts. Users supply observed deaths and an event calendar (for example
    COVID-19 waves or typhoons); the app fits one or more statistical
    baseline models (historical average, negative binomial regression,
    quasi-Poisson regression, zero-inflated Poisson regression, ARIMA
    (autoregressive integrated moving average) and SARIMA (seasonal ARIMA)
    models, GAM (generalized additive model) splines, and the model of
    Karlinsky and Kobak (2021) <doi:10.7554/eLife.69336>) on a user-defined
    baseline period, projects the expected deaths into the post-baseline
    period, and reports excess deaths, P-scores (excess deaths as a
    percentage of expected deaths) and confidence limits with tables, plots
    and downloadable reports. Launch the application with run_app().
License: GPL-3
Encoding: UTF-8
Language: en-GB
Imports: base64enc, data.table, dplyr, DT, forecast, ggplot2, ggrepel,
        htmltools, ISOweek, kableExtra, knitr, lubridate, mgcv,
        openxlsx, parallel, plotly, reactable, readxl, RColorBrewer,
        reshape2, rmarkdown, scales, shiny, shinyalert,
        shinycssloaders, shinyjs, stringr, tibble, tidyr, zoo
Suggests: officedown, testthat (>= 3.0.0), tinytex
Config/testthat/edition: 3
SystemRequirements: pandoc (>= 1.14) for report rendering; a LaTeX
        installation (for example TinyTeX) is required only for PDF
        reports.
URL: https://github.com/shanlong-who/exmort
BugReports: https://github.com/shanlong-who/exmort/issues
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-07-21 11:13:54 UTC; User
Author: Shanlong Ding [aut, cre],
  World Health Organization Regional Office for the Western Pacific [cph,
    fnd]
Maintainer: Shanlong Ding <dings@who.int>
Repository: CRAN
Date/Publication: 2026-07-30 16:30:08 UTC
Built: R 4.5.3; ; 2026-09-01 14:37:13 UTC; windows
