Type: Package
Package: tidyestimate
Title: A Tidy Implementation of 'ESTIMATE'
Version: 1.1.1
Authors@R: 
    c(person(given = "Kai",
             family = "Aragaki",
             role = c("aut", "cre"),
             email = "aaragak1@jhmi.edu",
             comment = c(ORCID = "0000-0002-9458-0426")),
      person(given = "Paul",
             family = "Roebuck",
             role = c("cph"),
             email = "proebuck@mdanderson.org",
             comment = "Copyright holder of ESTIMATE package"),
      person(given = "Kosuke",
             family = "Yoshihara",
             role = c("aut"),
             email = "yoshikou@med.niigata-u.ac.jp",
             comment = "Author of original ESTIMATE algorithm"),
      person(given = "Rahulsimham",
             family = "Vegesna",
             role = c("aut"),
             comment = "Author of original ESTIMATE algorithm"),
      person(given = "Hoon",
             family = "Kim",
             role = c("aut"),
             email = "hoonkim@kaist.ac.kr",
             comment = "Author of original ESTIMATE algorithm"),
      person(given = "Roel",
             family = "Verhaak",
             role = c("aut"),
             comment = "Author of original ESTIMATE algorithm"))
Description: The 'ESTIMATE' package infers tumor purity from expression data as a 
  function of immune and stromal infiltrate, but requires writing of intermediate 
  files, is un-pipeable, and performs poorly when presented with modern datasets 
  with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of
  'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.
License: GPL (>= 2)
URL: https://github.com/KaiAragaki/tidyestimate
BugReports: https://github.com/KaiAragaki/tidyestimate/issues
Depends: R (>= 4.1.0)
Imports: glue, dplyr, stats, rlang, ggrepel, ggplot2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-08-20 23:08:33 UTC; kai
Author: Kai Aragaki [aut, cre] (<https://orcid.org/0000-0002-9458-0426>),
  Paul Roebuck [cph] (Copyright holder of ESTIMATE package),
  Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm),
  Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm),
  Hoon Kim [aut] (Author of original ESTIMATE algorithm),
  Roel Verhaak [aut] (Author of original ESTIMATE algorithm)
Maintainer: Kai Aragaki <aaragak1@jhmi.edu>
Repository: CRAN
Date/Publication: 2023-08-21 03:50:02 UTC
Built: R 4.4.3; ; 2026-01-12 20:36:46 UTC; windows
