Spatiotemporal Nutrient Balance Analysis Across Agricultural and Municipal Systems

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Documentation for package ‘manureshed’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

manureshed-package	manureshed: Manureshed Analysis with WWTP Integration
add_centroid_coordinates	Add Centroid Coordinates to Spatial Data
add_texas_huc8	Add Texas HUC8 Data (Updated for OSF)
agri_classify_complete	Complete Agricultural Classification Pipeline
agri_classify_complete_custom	Complete Agricultural Classification Pipeline with Custom Efficiency Factors
agri_classify_nitrogen	Classify Agricultural Nitrogen Status
agri_classify_nitrogen_custom	Classify Agricultural Nitrogen Status with Custom Efficiency Factor
agri_classify_phosphorus	Classify Agricultural Phosphorus Status
agri_classify_phosphorus_custom	Classify Agricultural Phosphorus Status with Custom Efficiency Factor
agri_process_nugis	Process NuGIS Data for Manureshed Analysis
batch_analysis_enhanced	Enhanced Batch Analysis with Full Visualizations
batch_analysis_parallel	Batch Analysis with Parallel Processing
batch_analysis_years	Batch Analysis Across Multiple Years
benchmark_analysis	Benchmark Analysis Performance
calculate_cropland_threshold	Calculate Cropland Threshold for Exclusion
calculate_transition_probabilities	Calculate Spatial Transition Probabilities
check_builtin_data	Check Data Availability from OSF
citation_info	Display Package Citation Information
clean_category_names	Clean Category Names for Display
clean_text	Clean Text Data
clear_data_cache	Clear Data Cache
compare_analyses	Compare Two Analysis Results
CONUS_STATES	CONUS States
convert_load_units	Convert Load Units to Tons
create_analysis_report	Create Analysis Report
create_classification_summary	Create Classification Summary Table
create_network_plot	Create Network Plot from Transition Probabilities
data_sources	NuGIS and EPA WWTP Data Sources
download_all_data	Download All Datasets from OSF
download_osf_data	Download and Cache Data from OSF
export_for_gis	Export Results for GIS Applications
export_for_policy	Export for Policy Briefs
export_for_publication	Export for Publication
filter_by_state	Filter Data by State
format_huc8	Format HUC8 Codes
get_cropland_threshold	Get Cropland Threshold by Scale
get_nutrient_colors	Default Color Schemes for Nutrient Classifications
get_state_boundaries	Get State Boundaries for Mapping
get_state_fips	Get State FIPS Code
health_check	Check Package Health and Dependencies
integrate_complete	Complete Integration Pipeline (Updated)
integrate_wwtp_agricultural	Integrate WWTP Data with Agricultural Classifications (Updated)
KG_TO_TONS	Conversion Factor: Kilograms to US Tons
LBS_TO_KG	Conversion Factor: Pounds to Kilograms
LBS_TO_TONS	Conversion Factor: Pounds to US Tons
list_available_years	List Available Built-in Years
load_builtin_boundaries	Load Built-in Spatial Boundaries from OSF
load_builtin_nugis	Load Built-in NuGIS Data from OSF
load_builtin_wwtp	Load Built-in WWTP Data from OSF
load_user_wwtp	Load User WWTP Data
manureshed	manureshed: Manureshed Analysis with WWTP Integration
MANURESHED_CRS	Standard CRS for Manureshed Analysis
map_agricultural_classification	Create Agricultural Classification Map
map_wwtp_columns	Map WWTP Column Names to Standard Format
map_wwtp_influence	Create WWTP Influence Map
map_wwtp_points	Create WWTP Point Map
P2O5_TO_P	Conversion Factor: P2O5 to P
plot_absolute_changes	Create Absolute Change Plot
plot_before_after_comparison	Create Before/After Comparison Plot
plot_impact_ratios	Create Impact Ratio Plot
quick_analysis	Quick Analysis with Visualization
quick_check	Quick Data Check
quick_state_analysis	Quick State Analysis with Visualization
run_builtin_analysis	Complete Manureshed Analysis Workflow (Built-in Data)
run_state_analysis	Run State-Level Analysis
save_analysis_summary	Save Analysis Summary
save_centroid_data	Save Centroid Data
save_plot	Save Plot
save_spatial_data	Save Spatial Data
save_transition_matrix	Save Transition Probability Matrix
summarize_results	Print Summary of Analysis Results
test_osf_connection	Test OSF Connection
validate_columns	Validate Required Columns
wwtp_aggregate_by_boundaries	Aggregate WWTP Data by Spatial Boundaries
wwtp_classify_sources	Classify WWTP Sources by Load Size
wwtp_clean_data	Clean WWTP Data
wwtp_filter_positive_loads	Filter WWTP Data for Positive Loads
wwtp_process_complete	Complete WWTP Processing Pipeline
wwtp_to_spatial	Convert WWTP Data to Spatial Format