Package: marked
Version: 1.2.8
Date: 2023-10-13
Title: Mark-Recapture Analysis for Survival and Abundance Estimation
Author: Jeff Laake <jefflaake@gmail.com>, Devin Johnson
    <devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>, example for simHMM
    from Jay Rotella
Maintainer: Jeff Laake <jefflaake@gmail.com>
Description: Functions for fitting various models to capture-recapture data
    including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and
    the multi-variate state model structure for survival
    estimation and POPAN structured Jolly-Seber models for abundance estimation.
    There are also Hidden Markov model (HMM) implementations of CJS and multistate
    models with and without state uncertainty and a simulation capability for HMM
    models.
Depends: R (>= 3.5.0), lme4, methods, parallel
Imports: graphics, stats, utils, R2admb, truncnorm, coda, Matrix,
        numDeriv, expm, Rcpp (>= 0.9.13), TMB, optimx (>= 2013.8.6),
        data.table, knitr, kableExtra, bookdown
Suggests: ggplot2
LinkingTo: Rcpp
SystemRequirements: ADMB version 11 <http://admb-project.org/> for
        use.admb=TRUE; see readme.txt
LazyLoad: yes
VignetteBuilder: knitr
License: GPL (>= 2)
RoxygenNote: 7.2.3
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2023-10-19 16:11:56 UTC; jeffl
Repository: CRAN
Date/Publication: 2023-10-19 17:00:02 UTC
Built: R 4.5.2; x86_64-w64-mingw32; 2026-01-13 17:29:44 UTC; windows
Archs: x64
