Package: mixKernel
Type: Package
Title: Omics Data Integration Using Kernel Methods
Version: 0.9-2
Date: 2025-04-19
Depends: R (>= 3.5.0), mixOmics, ggplot2, reticulate (>= 1.14)
Imports: vegan, phyloseq, corrplot, psych, quadprog, LDRTools, Matrix,
        methods, markdown
Suggests: rmarkdown, knitr
Authors@R: c(person("Nathalie", "Vialaneix", role = c("aut", "cre"), email="nathalie.vialaneix@inrae.fr"),
             person("Celine", "Brouard", role = c("aut"), email="celine.brouard@inrae.fr"),
             person("Remi", "Flamary", role = c("aut"), email="remi.flamary@polytechnique.edu"),
             person("Julien", "Henry", role = c("aut"), email="julien.henry@inrae.fr"),
             person("Jerome", "Mariette", role = c("aut"), email="jerome.mariette@inrae.fr"))
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Description: Kernel-based methods are powerful methods for integrating 
    heterogeneous types of data. mixKernel aims at providing methods to combine
    kernel for unsupervised exploratory analysis. Different solutions are 
    provided to compute a meta-kernel, in a consensus way or in a way that 
    best preserves the original topology of the data. mixKernel also integrates
    kernel PCA to visualize similarities between samples in a non linear space
    and from the multiple source point of view 
    <doi:10.1093/bioinformatics/btx682>. A method to select (as well as 
    funtions to display) important variables is also provided 
    <doi:10.1093/nargab/lqac014>.
License: GPL (>= 2)
Repository: CRAN
BugReports: https://forgemia.inra.fr/genotoul-bioinfo/mixKernel/-/issues
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
URL: http://mixkernel.clementine.wf
LazyData: true
Config/reticulate: list( packages = list( list(package = "autograd",
        pip = TRUE), list(package = "numpy", pip = TRUE), list(package
        = "scipy", pip = TRUE), list(package = "sklearn", pip = TRUE) )
        )
RoxygenNote: 7.3.0
Packaged: 2025-04-19 08:25:35 UTC; nathalie
Author: Nathalie Vialaneix [aut, cre],
  Celine Brouard [aut],
  Remi Flamary [aut],
  Julien Henry [aut],
  Jerome Mariette [aut]
Date/Publication: 2025-04-19 09:10:02 UTC
Built: R 4.5.2; ; 2026-01-13 17:16:13 UTC; windows
