# Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants

## Documentation for package ‘orthGS’ version 0.1.8

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

agf | Angiosperms Gymnosperms Ferns
AngGym | Angiosperms Gymnosperms
A_selected | Adjacency Matrix for Orthology Graph
coltips | Colouring Tree Tips
gapless_msa | Remove Gaps in a MSA
getseqGS | Get the GS Sequence
madRoot | Find The Root of a Phylogenetic Tree Using MAD Method
mapTrees | Map Gene Tree into Species Tree
mltree | Build Up a ML Tree
msa | Multiple Sequence Alignment
orthG | Infer GS OrthoGroups Within a Set of Species
orthology | Infer OrthoGroups Using Tree Reconciliation
orthP | Search Orthologous of a Given Protein
sdf | Seed Plants and Ferns GS
selected_tr | Ultrametric Rooted Seed Plants Tree
speciesGS | Map Species Names
subsetGS | GS Proteins Report