90f3863d41909531457505c101ba56ca *DESCRIPTION
60da859463482a7ed89f264766728188 *LICENSE
08402b465a3f9b3d8fe5fa6b650ff1d0 *NAMESPACE
b446fa1830af812938f19c4c25d400ad *NEWS.md
e8a4e394c6f0bef82f353a76d5961e5f *R/AlphaSimR.R
6428607d5b4dd87f12f7118befa48b0e *R/Class-HybridPop.R
d62d99a444d7d6a2661140ce7346c509 *R/Class-LociMap.R
4527fddeefd46d03aa7081f8c5c62fda *R/Class-Pop.R
4daea4514899d855f937bf415361096a *R/Class-RRsol.R
c410744c6e02c426774f6e7bb5193d3f *R/Class-SimParam.R
9ed16a8c46a56abd2de5a4cd6ba00949 *R/GS.R
4dc8eb931188f3ae697408b589008aab *R/RcppExports.R
54f0ee8cebb6b5bad09235a376334261 *R/crossing.R
e201201b1adb84aca931f7507b666a37 *R/founderPop.R
83ad4ad3735c6cfaa1b7fed19b04dd1c *R/hybrids.R
ef2a45a9ea96e9beb2019905c2c7381c *R/importData.R
ee8b6fa20903f111fed4f458adccbbed *R/mergePops.R
d88bd3c67ac08677385ab320ca0cbc43 *R/misc.R
26399d6245ac95fcf3d19fddb4a73264 *R/phenotypes.R
e2e4d63bd37ee04022ea9acc46b187e5 *R/polyploids.R
9ee2c01ca623f7a4ef6fe88675ba190d *R/popSummary.R
f716b07f6640a70e7c89c813cbe9c785 *R/pullGeno.R
a64cb98f4ac2b734a7385a3f05f9f7a5 *R/selection.R
b0690de78dc6b600d37e76b81537122c *R/writePlink.R
3efdfc14d65482e05962b775d383b2d6 *R/writeRecords.R
71d7fb802a7ca15f94cb7aebf7d1892f *README.md
c0667bf8547768dfb14c4583274f0548 *build/partial.rdb
c44b618cb45c3d14234de29129dbbb9e *build/vignette.rds
b1e9d1f2a12cf4ca3fced3bbc60a519c *inst/CITATION
757f00f13de5ddf3a0e939019f588b5f *inst/REFERENCES.bib
27dabe3ee39e9e538504b1c66808454a *inst/doc/intro.R
7e2c9d0f6e2f491ba92e1344a911567e *inst/doc/intro.Rmd
8dd48b20b32df354cecdfb3dc3f651ad *inst/doc/intro.html
41d9bac5bd56c1722ba82f7848b0d0d3 *inst/doc/traits.Rmd
ef8ccd2acbb711db273dc9df1a3d4875 *inst/doc/traits.pdf
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1e4e9e828f4191762dd493292c3ec49d *man/MapPop-class.Rd
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85ca7654382a579ab0aa466ae6578f1e *man/NamedMapPop-class.Rd
826d5549ee0e0413898a6f000782bcd9 *man/Pop-class.Rd
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a374d7eb43bf5c45c754bab29d50c898 *man/RRBLUP2.Rd
3031cfff58695fa07a4cd0f4512ef479 *man/RRBLUPMemUse.Rd
f7af479aed1608aae9c0568eae8dcdaf *man/RRBLUP_D.Rd
34011b7216e253837ffb1e19824e3c69 *man/RRBLUP_D2.Rd
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a6d33586e718bc8cd6d3b5c959dcb301 *man/RRBLUP_GCA2.Rd
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336df501411dfe1a36f3e604ac1996c2 *man/RRBLUP_SCA2.Rd
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59e77448220041d5f2974305d3722466 *man/SimParam.Rd
54a729944d353cea045e029a66ca91a9 *man/TraitA-class.Rd
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7e836a223c1e5d6addcb016e8efda195 *man/TraitA2D-class.Rd
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bc6177243845a1c8e3cda85a604ae0cb *man/bv.Rd
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f99469b0b681b5bc0713f0e856a28c8a *man/calcGCA.Rd
f4c0c95de3d7e3d5bcbcaa69ffb84793 *man/dd.Rd
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53a4d8651ea5875a3f99bc74887ccc53 *man/ebv.Rd
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8b125d39347ffd8bf6bc96f1d5c6e4d0 *man/importHaplo.Rd
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01d26fdf412da45dd68547234fbc3c0b *man/isPop.Rd
0fa687239d14587b3a68d41142a7a441 *man/makeCross.Rd
059634cca577a0c9e4250e71e3aef24e *man/makeCross2.Rd
58e58de64365c78c21b4564941750153 *man/makeDH.Rd
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41ba0e75b6d017aa9cc9956fb4b675c5 *man/meanG.Rd
3deb646833c8bc5af52c34e97eb931b9 *man/meanP.Rd
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3837bcbd7b91f08b0eb3ff5f6fc3e975 *man/mergePops.Rd
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24d3640b91f3827b57a7f694cd2d95ba *man/nInd.Rd
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9f4ed2dbfbadd1068ba8c0f58ab0b074 *man/newMultiPop.Rd
2abb11e38e54bc115ccde876e24ceb0b *man/newPop.Rd
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5ba9a4e2aed9e3902f90e46faa19e75a *man/pheno.Rd
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9ff41591ce4b8ac1bb5e869d3601f929 *man/resetPop.Rd
217d0fd28673ab1e6cf6102baf1f68cb *man/runMacs.Rd
68cbf69ae2e7f2ab30a1dafa95190644 *man/runMacs2.Rd
5541a15fb63ed3081a41746da7c32d25 *man/sampleHaplo.Rd
0b64e285a188db25922f8cdb86565c0d *man/selIndex.Rd
61c034d133826de06fab410848787dd8 *man/selInt.Rd
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673d12b3a6d8651fc9878a418094273a *man/selectOP.Rd
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64dd5e30b978c7faad65ce85a67b240c *man/setMarkerHaplo.Rd
5becf8fee192f58816cb2cc57b511cd1 *man/setPheno.Rd
1ebb2323b1150aa0ef9564f4a4fb4a1a *man/setPhenoGCA.Rd
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8dc3559388f8141c0e6125a640af218f *man/smithHazel.Rd
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57a76761cde382f792e6396aabebbd61 *man/solveRRBLUPMK.Rd
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3ea5fa5fe51978446b386a3e43ad0dc4 *src/alphasimr.h
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689153b05dde5146d925fededd45528e *src/calcGenParam.cpp
610876505ca439dd6ac7a6d714d79f8d *src/constants.h
72e1755d9fa0b18527066cd5ee8701de *src/datastructures.cpp
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8c04cd5d91ae77f6305a1dfc6611bc20 *src/simulator.cpp
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5cb19d7769b660f96d79c3cd492ca391 *tests/testthat/test-statistics.R
3073638765feb6c928efcaeed5bfe1d0 *vignettes/AlphaSimR.bib
bc8c254fc7cf5be7296e91c6bb8cdb68 *vignettes/articles/AlphaSimR.Rmd
a40f999e5efcb28346df47c18f3053f7 *vignettes/articles/DataImport.Rmd
74d0bbc7cf7b4c225bd23d4da04b0884 *vignettes/articles/Genome.Rmd
0802002e1c0534f7d8cbea726e97ba74 *vignettes/articles/GenomicSelection.Rmd
4ecbe411f6c80123b4d6975f08d30224 *vignettes/articles/Meiosis.Rmd
871654e0e0d331d639d075d60da2dd2e *vignettes/articles/Misc.Rmd
e316a2217064bf479d4b572c9faab565 *vignettes/articles/QuantGen.Rmd
1d9b092c4eafaaebc0aad2a6c63521a1 *vignettes/articles/Traits.Rmd
7e2c9d0f6e2f491ba92e1344a911567e *vignettes/intro.Rmd
41d9bac5bd56c1722ba82f7848b0d0d3 *vignettes/traits.Rmd
