92430924ed091bd76c6bb8aaba0cb103 *DESCRIPTION
5e6ad13cd840407dd2fc433a39077052 *NAMESPACE
4ae04fececbe1460e620a3683e845bcd *R/BB_Likelihood_counts.R
5d8cc64ab940b8e5260c90d759839bb0 *R/BB_Prior_prob_phi.R
47afaf21083c9563580aa3e110141365 *R/BB_Update_mu.R
e2d0bd183bef65a3b764c4c3c3abc112 *R/BB_Update_phi.R
fe7d2a3cc4395851b2dd746fa4a24c27 *R/BB_Update_thetas.R
4fb4baec67581ef42ba98e6560adc509 *R/Covariance.R
55f3abfc5cdb778836e546fe34a69bef *R/Initialize.params.R
93cab56adad02fa1602622195ddcde62 *R/Likelihood_counts.R
725f6d9d5ab6933657b1ef5397b906e7 *R/Likelihood_thetas.R
bc5dd7bd9f295f9fbc3f20df2e8fa1c4 *R/MCMC.R
1e6231d48843fdb44c043e8ce98546fb *R/MCMC_BB.R
27977f0ab244de6b22a984e5cad85da0 *R/Prior_prob_alpha0.R
d0e3364118c57ed06fa2426097322a6d *R/Prior_prob_alpha2.R
004bda996ccb9727db238a176877c7a3 *R/Prior_prob_alphaD.R
a683a5249c9072d5702baaee9a8ab13c *R/Prior_prob_alphaE.R
946b55fa9c0e91de38f2f45dff727b4d *R/Prior_prob_beta.R
88acc092ebdea3aec22c7a4ccb55fa72 *R/Prior_prob_mu.R
57977b95b82c92fe0b26b50eab75a160 *R/Shift.R
3385d24bc410fc40d3f005a1f6486ba1 *R/Update_a0.R
316d2898b82be7decf8fc0bcd83f4115 *R/Update_a2.R
1d16200f2dc7d0ba0dec076018eb1b2a *R/Update_aD.R
b14e2705e0d2561d25884cb80b511df8 *R/Update_aE.R
e9fff34f8399b0a0b4969cf491f7c186 *R/Update_beta.R
033981ee7dd34e201b532badacb9cff5 *R/Update_mu.R
ad0149b9831918431cef14cf2777c9e5 *R/Update_thetas.R
c8914f10acddccee33a286bd23af8532 *R/a0_gibbs_rate.R
593760be39162484a8a7e98f42519a56 *R/calculate.all.pairwise.Fst.R
fe91191087232ccb857cabfb1e366b48 *R/calculate.pairwise.Fst.R
364963668b11d4d7e421ae7e5816c734 *R/identify_invariant_loci.R
083ea0bc305fdde2434319fc04efc881 *R/link.up.posteriors.R
6a49058abc5bd3dc35026d121afede53 *R/load_MCMC_output.R
117c48c6d5b53f55182fb9bc04045520 *R/load_posterior_predictive_samples.R
ec4cf2574a8730c9690b58b9f279e967 *R/make.continuing.params.R
1bcb2e2a9db00660e0fca62080dd1fd8 *R/plot_acceptance_rate.R
9e5dc14b2e2de958340bac733966775f *R/plot_all_acceptance_rates.R
666d7b0eba881641e80bcc8cec6c27d5 *R/plot_all_joint_marginals.R
629e8cc7a605fb568c405c7f100b738d *R/plot_all_marginals.R
5be3a973d4744dae0e48b75ddfd59b18 *R/plot_all_phi_marginals.R
8c10596748fb155d1f2e339674360f4e *R/plot_all_phi_trace.R
2ad53d6f423a5db6b896db05bfe1cf7f *R/plot_all_trace.R
841e750ad4d7fa744ed14ab2314c6369 *R/plot_joint_marginal.R
6b47df2cdbc7c0dcaf76668cec2a311e *R/plot_marginal.R
521c4741c049a97f329c10fa6aa224bd *R/plot_phi_marginal.R
4291a369b3c3edff094f14c4f40dee27 *R/plot_phi_trace.R
28cf33374171f803eace39062bcbe872 *R/plot_posterior_predictive_samples.R
16594fdc4675bb62c058dd02d06a94fc *R/plot_trace.R
b08f0dd7621c3ac492505c3dcd30dff3 *R/posterior.predictive.sample.R
9395bf3036af9bc8e76aea7fc261979a *R/simulate_allele_count_data.R
94147ce90b21ad726122cc19a9a7b2a8 *R/transform_frequencies.R
746b15618172f5be6dbdd35c3ad70826 *data/HGDP.bedassle.data.rda
e6afdd23b881fb9b73c58a624c3601a5 *data/mcmc.operators.rda
ebf1a1d0c7d8b987466c4da21e5204b4 *man/BEDASSLE-internal.Rd
09bed5340b5f1dbcc5760c002ff4e867 *man/BEDASSLE-package.Rd
7d0a423408e62395fd2d440f2539c024 *man/Covariance.Rd
a8c093111298350085762fd616c3ccfc *man/HGDP.bedassle.data.Rd
010b2bf96ea56dbd5031f0771bf14bc5 *man/MCMC.Rd
6a965f94937e459a9cd78f036dd32b9c *man/MCMC_BB.Rd
3bd38fce490a0775833c9e5090aecf01 *man/calculate.all.pairwise.Fst.Rd
62184089994369e8970c2f35afcadfa8 *man/calculate.pairwise.Fst.Rd
b40f5018109b7813e9a74440bca5e3d1 *man/link.up.posteriors.Rd
30cfaebb8cb62599a6aa22d478b5947f *man/make.continuing.params.Rd
2a90639a42f22c1eabac32afce8ebeee *man/mcmc.operators.Rd
2db39480522e3747793d8625d38e26d7 *man/plot_acceptance_rate.Rd
26326e957c2afbc4413983b88a49f165 *man/plot_all_acceptance_rates.Rd
1330e4027e90f5099fa63289bb4cd6da *man/plot_all_joint_marginals.Rd
cc6fd4635d353f82ab4b0966bb57c455 *man/plot_all_marginals.Rd
fda498254318e0988659de4a8df9779b *man/plot_all_phi_marginals.Rd
8f5ad826a1040194accf2e059080047c *man/plot_all_phi_trace.Rd
bad34de28d90561635c9cfee59400770 *man/plot_all_trace.Rd
2743889e253853cf42e01e91a9818012 *man/plot_joint_marginal.Rd
cede4241cfbfb8b7e23ba27320fc33d2 *man/plot_marginal.Rd
7f678b2e53d05f7248177c2caaa81134 *man/plot_phi_marginal.Rd
1ef86ca68703a71c8a3623ecd3281dfc *man/plot_phi_trace.Rd
959148aa954dda07d68976484bd9c239 *man/plot_posterior_predictive_samples.Rd
dd01c572525fe06073b4aafb40bde94d *man/plot_trace.Rd
977e36daa27cac099552cf2afdf735d8 *man/posterior.predictive.sample.Rd
