84a79ef35ba79c630eaf512c1450713f *CHANGELOG
23716c0924f7de25cfba8d71302b668e *DESCRIPTION
0bb9a219d8dcebb243dcb24dd69eb132 *NAMESPACE
d70587dd207cf447e1315a5014e69c78 *R/Claddis-package.R
cf597d560e3e43114a807633cfc737bb *R/align_matrix_block.R
4919f86697947942bcdc0b94e8371f81 *R/assign_taxa_to_bins.R
7e8d2c2b120b923c6813a59c6e0b9790 *R/bin_changes.R
5189de9765e655e6de63ba476cb6bbe3 *R/bin_character_completeness.R
98cdd98928700966ebe779aba6740e19 *R/bin_edge_lengths.R
e353934f59dc0b20560c93a6a91e7fa0 *R/build_cladistic_matrix.R
048783a666fe2964ccc72e8de1fe8b11 *R/calculate_morphological_distances.R
cc687de4d051bc4675738a65817bf040 *R/compactify_matrix.R
aa85fd2454761c0ccce2b97071a9d2d6 *R/date_nodes.R
ffc0f6df5b24abee4e9008ca0a1c1487 *R/estimate_ancestral_states.R
4587b0c6e2665384d8e2cd621fcea3f4 *R/find_descendant_edges.R
b974394fd2a9bd54c63b4dfb002e5125 *R/find_linked_edges.R
2fc87d79b842d3bab87cd3f095902a84 *R/find_minimum_spanning_edges.R
ee2229d7abf12a11b68159b4b29cb42d *R/find_mrca.R
bacf9f100b1254f5c209b9d7f6871d4d *R/fix_root_time.R
9d95c5574e4a010c487aaf9bdaad9329 *R/map_dollo_changes.R
95f1587886987f1e394cdd019844cd51 *R/map_stochastic_changes.R
394202c3337514758808424f9cb3d4d7 *R/match_tree_edges.R
d7cd9c52f4b5689a0d51fbef110281d8 *R/ordinate_cladistic_matrix.R
4e1a27f217d1cdc8ce86118201c4d4c1 *R/partition_time_bins.R
7b96c14861da37e80860130409f8a90b *R/plot_changes_on_tree.R
2d7e510c02a89914897ffccc5e2ab6ad *R/plot_chronophylomorphospace.R
0222f38b2b31bb5686d60c23b0b1ac5d *R/plot_morphospace.R
21e04bd9a400820d8fda83e557ff749f *R/plot_morphospace_stack.R
bff91991efa36a49d0bfdfa1fbd19acf *R/plot_multi_morphospace.R
2e2e937235738f69ce5560a7df3fedbd *R/plot_rates_character.R
25569bf26a83da36d6d07503d75fe928 *R/plot_rates_time.R
d832042ea0b6944d1a06fbc3ca39b515 *R/plot_rates_tree.R
450239485168657490cb3a46b4d3366e *R/prune_cladistic_matrix.R
a6aa4900112cdaf3417b474f84f77df8 *R/read_nexus_matrix.R
df1b938688859ba821e72858dc563d49 *R/safe_taxonomic_reduction.R
ce9378133026d53486d705ab20d35261 *R/safe_taxonomic_reinsertion.R
6fe0e676680d5a174c99c41e935d2304 *R/test_rates.R
e5703496f59bccab6633e81dee5b6155 *R/trim_matrix.R
bf4794fa2a7de317f6a3932b3ebce108 *R/write_nexus_matrix.R
79418836ec32fe32e664cc5db5e60824 *R/write_tnt_matrix.R
31293e975c6d7ff0e09f84b6ce11853f *README.md
70c7cb740d61bf9d9439292dae8b1df6 *data/day_2016.RData
6745e03e231d1490acbb701881c0d19c *data/gauthier_1986.RData
5e11eb441244eccbda76b013a528f1f1 *data/michaux_1989.RData
9e2c91b9a196082912e971160236db0d *inst/CITATION
52490f0761a237300c735e04d0931d9a *man/Claddis-package.Rd
ca4bc33be661b771d23343f0b715d9f4 *man/align_matrix_block.Rd
0468af03648af60c6f9821601291e44f *man/assign_taxa_to_bins.Rd
5051c886b48e7fcd7df5774ef9c8f126 *man/bin_changes.Rd
3efb111c2142a4763f9db08258820b98 *man/bin_character_completeness.Rd
551118aae17c6f6c44e95cfedeb54831 *man/bin_edge_lengths.Rd
c882adcd5debbbeba1dfd27db0177c35 *man/build_cladistic_matrix.Rd
0927dfd7c5868dfc63d9c9093c989d9e *man/calculate_morphological_distances.Rd
5c5aa4bd95e1b0fb8b46817f46ccb437 *man/compactify_matrix.Rd
eecc0733c67133ddc7b59a1377b1e2aa *man/date_nodes.Rd
7f595aa802efefe2ba39a34e1f674997 *man/day_2016.Rd
c2dae507d7241876cc300b48aff14420 *man/estimate_ancestral_states.Rd
43099443a4da5b41fec8d266b7d549d7 *man/find_descendant_edges.Rd
932c6bde9f88911c87848f51b0bc0f02 *man/find_linked_edges.Rd
48564f4f17e32e2a1cb3e31ad6f3a2d0 *man/find_minimum_spanning_edges.Rd
d41c3433b9fe1938dcc44a26b9b33b04 *man/find_mrca.Rd
ff8d90b80ba4f7e70747ff41d4c307a0 *man/fix_root_time.Rd
b0cb25332a7fbcae42e5d0922066a743 *man/gauthier_1986.Rd
d3ef17553e0dc7c44631bd540c81ebb1 *man/map_dollo_changes.Rd
2a1048939a0fe6d091fc7a86b391ccb5 *man/map_stochastic_changes.Rd
2981ac7190bb63fa277b1aebc2b25616 *man/match_tree_edges.Rd
174715cb8023098292cae7ebce13a4d5 *man/michaux_1989.Rd
7104becfee34e7e944a3730d3bc90238 *man/ordinate_cladistic_matrix.Rd
f7fb82af1b41670dfc507b55a08d57d6 *man/partition_time_bins.Rd
c8aa71666cd6d0de925d5ee1b66c85fe *man/plot_changes_on_tree.Rd
974b9f1abb6410cc212b51e4cb3f465a *man/plot_chronophylomorphospace.Rd
681c3c30b9fd890c155ad84ba732e91f *man/plot_morphospace.Rd
48b35f5c25b494b78223ecfe425c53b1 *man/plot_morphospace_stack.Rd
fe73463b826eb418aa159b75c522c17a *man/plot_multi_morphospace.Rd
9141795dbf3189b56df065ac87e62cd6 *man/plot_rates_character.Rd
fb032da251700c82e015ed1a01708c7a *man/plot_rates_time.Rd
6fc882b7c812e8110e05b0188ecec749 *man/plot_rates_tree.Rd
1f6a468d97c6e0ac252d497e61cbcfe0 *man/prune_cladistic_matrix.Rd
2d391f9a500561b9f5f2bc9df77429b3 *man/read_nexus_matrix.Rd
85c86997c6cd962cabca683c41ea89dd *man/safe_taxonomic_reduction.Rd
740b61c2eca70d54625e8bc77b46512b *man/safe_taxonomic_reinsertion.Rd
bf9346cbced3f09a9f0b1826813e8c63 *man/test_rates.Rd
bb4de51cf45005d5a65007bb9d030385 *man/trim_matrix.Rd
306b6f7d80ea51781a4ace94118a12f0 *man/write_nexus_matrix.Rd
773eca857dcf028425cdeae7d0218f67 *man/write_tnt_matrix.Rd
91294429403b65525f515e7475825ce4 *tests/testthat/test_bin_changes.R
69d7a2ae902b8e44a9f5eabe2a034f02 *tests/testthat/test_find_linked_edges.R
2b79be20a8941077c1cc0af4840fcc89 *tests/testthat/test_find_mrca.R
