fccf03a50ad43b1008fa13f5816266f8 *DESCRIPTION
c8a5b634840fb18074893f159617efc3 *NAMESPACE
8d0d54bcb6d79a88af3bc99defee931b *NEWS.md
35ba1b649bce3f10e69dbd709330a5f4 *R/DSAIRM.R
018feabf6a05ba6cadd68ab981001ee2 *R/data.R
123b741cc3f0d6353cb4e5b3c34dc3c6 *R/dsairmmenu.R
f297a4f021639b387b2384c779b92dc0 *R/generate_documentation.R
548f87a8a6c256fef4f2d0a57c50c386 *R/generate_equations.R
c6631603a08b591205c1d4a71df4a9ae *R/generate_fctcall.R
47bfdbd3dafa877674689466c63a905f *R/generate_ggplot.R
21827ee3b50c31842c775e5e89e409be *R/generate_plotly.R
3f946d39a9e89db872efac39fb4eaab2 *R/generate_shinyinput.R
545bb82fb02e34ff3e3c29ab33983f97 *R/generate_text.R
7f64aea9476250b6749a02108dcd6934 *R/run_model.R
b4180e4ca4af33c812efb65e94b363e9 *R/simulate_basicbacteria_discrete.R
fe3eb55f0cb96ac897310a5e29e922c0 *R/simulate_basicbacteria_modelexploration.R
a290e2476c9195bc019ca0279d2d53b6 *R/simulate_basicbacteria_ode.R
8d6fb2bfd8cf4f6a06d739f53f97adb7 *R/simulate_basicvirus_fit.R
c3fd5e7904b267b02c8896a1d38848ad *R/simulate_basicvirus_modelexploration.R
d1b2179704698e7fe286a55cbc4546db *R/simulate_basicvirus_ode.R
99c68f987137e0a77d53acabe006fd30 *R/simulate_basicvirus_stochastic.R
e4ac986fcbd69c2d80038537cdb75647 *R/simulate_confint_fit.R
10267df11b96551f0669ebcd8fa66598 *R/simulate_drugresistance_stochastic.R
e4d4bdc7815724f7653a9c36a3c40a43 *R/simulate_fludrug_fit.R
e426357bb882beadaef3f142597c4598 *R/simulate_modelcomparison_fit.R
445c04941683c42eba4b1d582ae2d718 *R/simulate_modelvariants_ode.R
16b633f60a8a485f998e801e05e1d396 *R/simulate_pkpdmodel_ode.R
b2a00c051662f7221fd426dea427541b *R/simulate_usanalysis.R
1ff0162e4a87d84e5d416336adefe4e2 *R/simulate_virusandir_ode.R
54fd5b8cb095646cd24f8c11715bfffb *R/simulate_virusandtx_ode.R
b50a8a97002fe5ffede4558123751a38 *build/vignette.rds
593b6eaa31a33329bea735520623c7b4 *data/hayden96flu.rda
d91eb316b968e1e6631fe80871e41930 *inst/CITATION
316de1a280a6e82d8a1d31cb34001480 *inst/DSAIRM/app.R
0102bd08e19332f5c4c6a02a497a67f1 *inst/DSAIRM/google-analytics.html
006b1b231eab1f5068b7d9c7748bc66f *inst/DSAIRM/packagestyle.css
3e0165a5b04625514d311075a93a7a7f *inst/DSAIRM/rsconnect/shinyapps.io/epibiouga/dsairm.dcf
42311b590fb4177bdb8267bca211c5dd *inst/appinformation/apptable.tsv
87d827539f6f85481149c544e2850fb7 *inst/appinformation/bacteriaexploration_documentation.Rmd
cee50904b6d675db9b96bdf43d0ab08e *inst/appinformation/bacteriaexploration_documentation.html
53ebad0fc072d317c6c47b8f5bdd43e7 *inst/appinformation/basicbacteria_documentation.Rmd
3da4582bc0778127ce5cbe2c3fb913c7 *inst/appinformation/basicbacteria_documentation.html
6d9ac5e9dd99ae985ae69336ee12ed1c *inst/appinformation/basicvirus_documentation.Rmd
0b27f04b332e2dfff688d1ef15853606 *inst/appinformation/basicvirus_documentation.html
206f5c1bd8daf5116b685e2bd1be52a0 *inst/appinformation/basicvirusstochastic_documentation.Rmd
627b3f5652c00d9cd8e8c58c9c696e18 *inst/appinformation/basicvirusstochastic_documentation.html
0dd4ad6882479fa3cc88b032436139eb *inst/appinformation/drugresistance_documentation.Rmd
cdfe3bb7631142da38d981ab6a96f3f2 *inst/appinformation/drugresistance_documentation.html
9fc143c1bcdd1bb4da47303587c32e9c *inst/appinformation/fitbasicmodel_documentation.Rmd
3187c2826a9f367ea157cd1bfc3b25ad *inst/appinformation/fitbasicmodel_documentation.html
a2355f3b89f73b258ea47fdb8e13079d *inst/appinformation/fitconfint_documentation.Rmd
7924e4e167cc38f7f977fdee05dd1523 *inst/appinformation/fitconfint_documentation.html
b1dcd15d4a9b449779d75fc03cf879a2 *inst/appinformation/fitfludrug_documentation.Rmd
9689053313f6d8627f8c39a5f4aef14a *inst/appinformation/fitfludrug_documentation.html
8698d2d9aabf9beba496b1c68f9d3d1a *inst/appinformation/fitmodelcomparison_documentation.Rmd
8fcd66ad57e4f489e412a9804d761509 *inst/appinformation/fitmodelcomparison_documentation.html
a68b45777fd6bfc5da056c28e28ee6a5 *inst/appinformation/modelvariants_documentation.Rmd
edd855eaa82ff1a6a475554708c6dba4 *inst/appinformation/modelvariants_documentation.html
9c2be3c4aa5b50e3624c55a1b2bc1596 *inst/appinformation/pkpdmodel_documentation.Rmd
b0f5713db0121bad895f7cc2ec25b966 *inst/appinformation/pkpdmodel_documentation.html
67425c9359fe72b5255b28347deefec0 *inst/appinformation/references.bib
4067bb84d7d8fd80d3f544bb85ba5f8d *inst/appinformation/usanalysis_documentation.Rmd
70fc248eea41fe28a68bb4b0b1bb87d3 *inst/appinformation/usanalysis_documentation.html
c94d48cb9dd24fd2da3d2bc65c512264 *inst/appinformation/virusandir_documentation.Rmd
a4dd38d2e36081f20df548008cbefb75 *inst/appinformation/virusandir_documentation.html
c81fa3841c3cbaa51e41a6dac6ba8303 *inst/appinformation/virusandtx_documentation.Rmd
51f15507b33b49e02ce13ef202dad206 *inst/appinformation/virusandtx_documentation.html
f2f3d8406312236ea9f50010c972a8ad *inst/appinformation/virusexploration_documentation.Rmd
4fdb160ae6be859e3161abfe27cf8039 *inst/appinformation/virusexploration_documentation.html
a291c197416764086c11a8041893d689 *inst/doc/DSAIRM.R
2708f0982d901d11b6a7da504f53df6c *inst/doc/DSAIRM.Rmd
8548bb19353b993f21cf14c334a9668e *inst/doc/DSAIRM.html
c2006dc0c53e8acd8e7207d889099e10 *inst/docsfordevelopers/documentation.md
d8bf163ebbe2f2475d5d4d7625f53bff *inst/docsfordevelopers/processing-script.R
6a6c56600fea6bab8c4b30cf21e5414a *inst/helperfunctions/fill_tasktable.R
98ea9c41aa7dea101d77024e3b242b8b *inst/helperfunctions/get_settings.R
847d77bf200868278a1c0c3fbf7dc7cc *inst/helperfunctions/make_tasktable.R
9a684dbb7dd73419acaf1ca12d824746 *inst/helperfunctions/save_tasktable.R
d37b36c1f0ddf10932e81243aaf6b503 *inst/helperfunctions/write_tasktext.R
89d4da5a1555d9abe3942da48d5daed8 *inst/mbmodels/Environmental_Transmission_model.rds
e528b56973561b88656ad92cf6bb4f86 *inst/mbmodels/SEIRSd_model.rds
fb556eaea4daadc027a0f982c8b6ef99 *inst/mbmodels/SIRSd_model.rds
b071d5b4d82af3d8b200dafa92ac3338 *inst/mbmodels/SIR_model.rds
c67c605da636f352efa1b0a8829aec21 *inst/mbmodels/Vector_transmission_model.rds
b4180e4ca4af33c812efb65e94b363e9 *inst/simulatorfunctions/simulate_basicbacteria_discrete.R
fe3eb55f0cb96ac897310a5e29e922c0 *inst/simulatorfunctions/simulate_basicbacteria_modelexploration.R
a290e2476c9195bc019ca0279d2d53b6 *inst/simulatorfunctions/simulate_basicbacteria_ode.R
8d6fb2bfd8cf4f6a06d739f53f97adb7 *inst/simulatorfunctions/simulate_basicvirus_fit.R
c3fd5e7904b267b02c8896a1d38848ad *inst/simulatorfunctions/simulate_basicvirus_modelexploration.R
d1b2179704698e7fe286a55cbc4546db *inst/simulatorfunctions/simulate_basicvirus_ode.R
99c68f987137e0a77d53acabe006fd30 *inst/simulatorfunctions/simulate_basicvirus_stochastic.R
e4ac986fcbd69c2d80038537cdb75647 *inst/simulatorfunctions/simulate_confint_fit.R
10267df11b96551f0669ebcd8fa66598 *inst/simulatorfunctions/simulate_drugresistance_stochastic.R
e4d4bdc7815724f7653a9c36a3c40a43 *inst/simulatorfunctions/simulate_fludrug_fit.R
e426357bb882beadaef3f142597c4598 *inst/simulatorfunctions/simulate_modelcomparison_fit.R
445c04941683c42eba4b1d582ae2d718 *inst/simulatorfunctions/simulate_modelvariants_ode.R
16b633f60a8a485f998e801e05e1d396 *inst/simulatorfunctions/simulate_pkpdmodel_ode.R
b2a00c051662f7221fd426dea427541b *inst/simulatorfunctions/simulate_usanalysis.R
1ff0162e4a87d84e5d416336adefe4e2 *inst/simulatorfunctions/simulate_virusandir_ode.R
54fd5b8cb095646cd24f8c11715bfffb *inst/simulatorfunctions/simulate_virusandtx_ode.R
035e88136ce67d5bbb51b5d7c8ac862e *inst/simulatorfunctions/simulatorfunctions.zip
5aa8ec9861ecc3395c2dcad922fedf0a *man/DSAIRM.Rd
272ae52e10384600370abebb20cd276b *man/dsairmmenu.Rd
d9d49d0c2ed634c2d731514d94a63355 *man/figures/logo.png
fb61b6fac5840a736aba1ee2c5f55fcb *man/generate_documentation.Rd
4ff7bb0253a1be150285bf4ac63070c6 *man/generate_equations.Rd
c296966e6eded7470620a6c2595249b5 *man/generate_fctcall.Rd
c66050331ab5e6767ed0067b8e92fbf5 *man/generate_ggplot.Rd
cb852ed493d478b3287f5b00bb77ee54 *man/generate_plotly.Rd
15694ae052a5456b6c7131ef3cd2ae47 *man/generate_shinyinput.Rd
99cdc2bfe23b9c85985008bd586eca9d *man/generate_text.Rd
c055da5491ffb72d39e68f79a3617d58 *man/hayden96flu.Rd
f35a75b3abb5cf6a25db3d685acb0fa4 *man/run_model.Rd
09b93d64ff335e78f1cc26c96607c1b3 *man/simulate_basicbacteria_discrete.Rd
ae6d3b3d3bc0c18f9a178e161d00cce6 *man/simulate_basicbacteria_modelexploration.Rd
91aae902fefb9973fee4eb4e800d905e *man/simulate_basicbacteria_ode.Rd
6f2baae05210f16a9c1be7d83312a3b7 *man/simulate_basicvirus_fit.Rd
4d1160bc94b8cda640a56fe81b623637 *man/simulate_basicvirus_modelexploration.Rd
9b67c75c1993abfc0949a65fe3695737 *man/simulate_basicvirus_ode.Rd
34df8cce4ee07d58b7a36a0bd7af156a *man/simulate_basicvirus_stochastic.Rd
c9d1aafccaec66f933c32b50ab17d0d1 *man/simulate_confint_fit.Rd
fa9923d9fd714248e765fc7fa4de743b *man/simulate_drugresistance_stochastic.Rd
eceb6c0406903bb2a0b90226b701191b *man/simulate_fludrug_fit.Rd
4637ada091cbb498a7e01f7292bdd6ca *man/simulate_modelcomparison_fit.Rd
01f57700797a38d4e8d8285aa9b7cbd6 *man/simulate_modelvariants_ode.Rd
37b0cf7b5bfb5ae39e300d8a6ac2db05 *man/simulate_pkpdmodel_ode.Rd
4f62adffbbdfe23f2f9dd52fce95b729 *man/simulate_usanalysis.Rd
791c9142422658385df8ebedc9f67767 *man/simulate_virusandir_ode.Rd
12df2ca298d7007b21e6d213cca07847 *man/simulate_virusandtx_ode.Rd
6e88f68c2fa9d73e8c1a10d6a43694e8 *tests/testthat.R
ce237dbf7a51b6bedb3c579997fda2b3 *tests/testthat/Rplots.pdf
b34105526bdbe9693df0aa3c740c4d91 *tests/testthat/test-fit-apps.R
4174e9707262793dbff6b0a70e5d875b *tests/testthat/test-generate_documentation.R
9e5bcfd4b075a88222b3f2f5f4714a11 *tests/testthat/test-generate_ggplot.R
dca48a9eec845772f10df8c8dd526620 *tests/testthat/test-generate_plotly.R
a87e38d97f8dca8ea83e33424ca53a80 *tests/testthat/test-generate_shinyinput.R
05900d847ff3d7ac96334c0b416a11e0 *tests/testthat/test-generate_text.R
5003684e594e5d7fdd5c95b7614020c4 *tests/testthat/test-generate_usplot.R
9016009abe67a723d211b8b73edf911f *tests/testthat/test-modelexploration.R
43c0c01a40301beee6004b563f553bb5 *tests/testthat/test-run_model.R
a64ae016f076e7d3e9baf58e594e294c *tests/testthat/test-stochastic-virus-app.R
2708f0982d901d11b6a7da504f53df6c *vignettes/DSAIRM.Rmd
c1fbce51d923ec325a99dce53eceb88a *vignettes/appexample.png
9477fda1721d6416f9876b6d095936ad *vignettes/mainmenu.png
12225da8ba827e0d6ed51737d01a884c *vignettes/modelexample.png
faec80b2d3c4cf1bbaae6837e77066ec *vignettes/mysimulator.R
9a4d413bd4170726335dda74b1fdd057 *vignettes/vignetterefs.bib
1a1fa4d9a5b0a2f72f256143f32443c2 *vignettes/whattodoexample.png
