0389e288ca23b0d9bf1bcb3c5945f9b1 *DESCRIPTION
0c0ced0a80bb25aff64a98b608590c3c *NAMESPACE
dbb0e021eacb82f0eb81626c36b08b5f *R/ScoringMatrix.R
8694062779bde977de73ddb05f3926fa *R/TKF91.R
46f3e86d897d92ffb4bdfddddc36d8c5 *R/TKF92.R
26e1520e0c11b2fbfac225923e299694 *data/GONNET.rda
7b35583b8c86a951f0a948387a59882e *data/GONNETBF.rda
13b4ea908bf3ed0d799d3e19b9c9af07 *inst/TestData/pair1.fasta
a340572ff44ae31a48ba84663edb6ff4 *inst/TestData/pair2.fasta
f3f5f9f6665e64f52684cdc2ff4101ae *inst/TestData/testSeqs.fasta
984877972cf12ad55bed68e8593dc06a *inst/buildMatrix/buildGonnet.R
10ac0097a2b0b978f719109493059ccf *inst/extdata/daymatrix.txt
87de06f8cc6485427752472387a78fd6 *inst/extdata/pair.fasta
13b4ea908bf3ed0d799d3e19b9c9af07 *inst/extdata/pair1.fasta
f3f5f9f6665e64f52684cdc2ff4101ae *inst/extdata/testSeqs.fasta
47da6803ca48da641e198088366580f2 *inst/extdata/testSet.fasta
121a629493cf6c71151ac0f670d59ef3 *inst/makePackage/TKF.txt
01035d18212d82ea501e9e7e9a72bd4e *inst/oldScripts/TKF.r
a88451d9fcc05b8f818b649e72bcce3a *inst/oldScripts/dynprog_TKF91.c
64a383772b09fdd0368fc6547d663247 *inst/oldScripts/dynprog_TKF92.c
fba9ca1d7a78c8ed990cbdd502546b09 *inst/unitTests/test_TKF91.R
b0097451a6d15ba71e8a9e4c6513d1b8 *inst/unitTests/test_TKF92.R
588e6fea2a6c5515abacba7072210b22 *man/AAToInt.Rd
23b3dc7128b1ae236826ab0ab88f8c2c *man/GONNET.Rd
b0c13a11c562c8d7d8ebfd98a207318f *man/PAMn.Rd
675419ac1525008d8fd196874fdec35e *man/TKF91.Rd
6c15528ad505690dd683c31dfb1c2194 *man/TKF92.Rd
768db9de175ce840d23227a399a106af *src/Makevars
ebb46f8b1bae6de018e88b656d112392 *src/Makevars.win
d78d050e1f86ff2c4c7748cdffb5769e *src/MathFunctions.c
6cf8a941f11fcc9d7963e3b78ca138a4 *src/MathFunctions.h
0d04cd1190bfc4e758155db8fdca4ec9 *src/R_init_TKF.c
9b76144ebfe3e5ab166140c26a40f4bd *src/TKF91.c
f87d75a54c3d3e15779295f508fd3a18 *src/TKF91.h
c4ef41cf4460950d841c7d702849778a *src/TKF92.c
64f60ad8cc4fc869e35504768319acc7 *src/TKF92.h
6908a47f3b663a9d4eae7585f823dc4f *src/matrix.c
f8cba0221b74e2034c824c874762e9c9 *src/matrix.h
726f3c97a2b296754ae7c621b551461c *tests/runTests.R
