4ab035d3b18e2911bb5c5be07cfd0708 *DESCRIPTION
24146c021a58c40d884ea98bebc9157e *NAMESPACE
20ac2f15c98f819069264cca85eea486 *NEWS.md
eaa9294d46752767a79ccc613b976e24 *R/Bootstrap.R
3fddf010a04e394c7393e7bba5152bcd *R/Fitch.R
b3b53e6c514a02f950b6c485355c527e *R/NNI.R
9a7929a9e2b8ea649b78463d055b1844 *R/Ratchet.R
e62d13e95e69e5431c123ea0b48d5585 *R/SPR.R
d78d77bb5fb97e80e8fe8fef88731127 *R/Sectorial.R
1ea20dd3f2ca8165bb4398f653274a04 *R/SuccessiveApproximations.R
fa2f708b7169049d86c6e0ce85ef77d5 *R/TBR.R
5b8b113af1e4e5d2b3354e753b6a5bd7 *R/TreeSearch.R
8d65207009508adfb996d234d95ec8e6 *R/data.R
a5096005c32d0e4c0c51d5e4a03c8e9e *R/helper_functions.R
00fdf37c61722ca5616bc7c384942a3b *R/phylo.R
db344fb63b2d1c6dba6f48858a302c80 *R/tree_rearrangement.R
d6abd8d642d66c4133c8732f3190973f *README.md
e2db62d78e84a9d41e3b984c586df85b *data/Lobo.RData
c0a883e4cba4bd4de7e316ac9fa38b3b *man/AddTip.Rd
9df170652f9a5a12e2ca3bc3e0a5f8f5 *man/AllAncestors.Rd
41e31f6f72f9f866da36a024dc64c508 *man/AncestorEdge.Rd
b5092e98e72cd42dfd7e4e6679d84584 *man/BootstrapTree.Rd
ec7671072f1d5f50fab1cd9cdd55cc1d *man/BootstrapWeightings.Rd
1a3505062e7eeeff7d376434c4af86b2 *man/C_Fitch.Rd
31209297e8bd2ceb07b9ddeca1a0da94 *man/C_Fitch_Score.Rd
82bf4776544374b8448d1eada373fc94 *man/C_Fitch_Steps.Rd
09c7f823796c72965187d168152a7ba3 *man/C_node_depth.Rd
e82dfdbb698d2299835dcc60a623863c *man/CladeSizes.Rd
a5c5709f059bf4f082311f864fa312d4 *man/Cladewise.Rd
e15414df7d292757ebab362d689b5b6a *man/DescendantEdges.Rd
5e8b19795b474db677e5a26f78812cf5 *man/DoSectorial.Rd
f94bef33d0976725274ab4eaf1802bab *man/EdgeAncestry.Rd
85301b989b2cc257a6a10895adc9ebe0 *man/EnforceOutgroup.Rd
e669729f349ea105c960759dda4dc8b0 *man/Fitch.Rd
2a9044bf3542a509d3506aea7e8ff6f1 *man/ListToMatrix.Rd
a741489167142e6d0693930f34863f18 *man/Lobo.data.Rd
769dc46d8bb46a26b98a38c3b4cacbe3 *man/Lobo.phy.Rd
09ff450e0c0ee45f1e8024c0195bb22a *man/NNI.Rd
c09f5f57f7b53980cb3fb2114edc6fa2 *man/NeworderPhylo.Rd
72b1a9327c3e6f130967d2b3450347f7 *man/NeworderPruningwise.Rd
234019efc7cec0f64ae330ea2b27dfb9 *man/OrderEdgesNumberNodes.Rd
89b1e7bfcff1b25260aef389ede56e59 *man/RandomTree.Rd
352ff94a1e660a8c35e0a2120fa6f78e *man/Ratchet.Rd
8f702e8bb0cc51a9ed6bfbbe2a965bbd *man/RearrangeTree.Rd
01fdb377e3894684f40468970041ca9c *man/Renumber.Rd
ad11c8bef8f954244cbea1f9e32d4fad *man/RenumberTips.Rd
166af39302e1c99c9ec8059877db69f4 *man/RenumberTree.Rd
cf45dc102e0e379e1339564b3afb1d02 *man/SPR.Rd
55854e2aed1d9eabb295d9b44aea1303 *man/SampleOne.Rd
27809db52c9322b4111cc97729aa642f *man/SectorHasData.Rd
107d6714f78ce584077453cbf5528964 *man/Sectorial.Rd
0760194a206120eef463ec789e5fab24 *man/SingleTaxonTree.Rd
9bbe0d3372e10dc6870df0185ecf765e *man/Suboptimality.Rd
47fc9b8c4e6b34a970bbc551046cdb3a *man/Subtree.Rd
a6bd4816d545e60a804ad7ec8b8aa586 *man/SuccessiveApproximations.Rd
7dc9762747190b79ce069affe696311c *man/SuccessiveWeights.Rd
bca2c215e4e210a5cf9078a92f5cec76 *man/TBR.Rd
919f014c0b37db1d79d58eea7ad2ba82 *man/TBRWarning.Rd
18db40af3cce1483466291f3f31e7f71 *man/TipsAreNames.Rd
85e2e26f7fd2ffb178d7d7d6ca995743 *man/TreeSearch.Rd
93d2a148371bd9787fccf06756bd47f1 *src/TreeSearch-init.c
16165c307781adec29bc4b36ed600494 *src/ape_reorder.h
24403271986b0c2ea7479ac8c28d5f6d *src/phangorn_fitch.h
41322c4b74ef75a2921b0f181005b8bf *src/renumber_tree.h
5f632bc9d6f6f0eaac3caf8080dd3fc1 *tests/testthat.R
935ffb597356a9a03e7be01246965ca2 *tests/testthat/Rprof.out
446760a9faf4c8d331f79651be8f2992 *tests/testthat/test-fitch.R
64079d7bbce3c56d12369c732f65c615 *tests/testthat/test-tree-functions.R
32b9d78e77151a3ce52f7352b4c245ac *tests/testthat/test-tree-rearrange.R
b5c65e43c4d66e2941f0318aaf4a4096 *tests/testthat/test-tree-rearranged-numbering.R
68a387a24b3aa37bfcbbcfce9c2d02b0 *tests/testthat/test-tree-search.R
