e21dbce80fcd87c4e9cc84926221f39f *DESCRIPTION
db97f398e901bbbf2e78f8b5876f9366 *NAMESPACE
051e6a57503c03c0b9201e83ede4b046 *NEWS.md
c1406b01774cdfd87fa3bc7500109560 *R/RcppExports.R
17e2b8bed79f5e9a1cda41f47448581e *R/adjclust.R
b08f9ae47e673049a61d5b0b1c3edc0d *R/buildHeap.R
bff8db81110cd2a129000dd5e167348e *R/chac.R
43f3975406b78511a3bea060897a5a9d *R/helpers.R
69666b577d5436832ec234d47c8497d8 *R/hicClust.R
1951cb2f1f839e6e5fac3162ae4c68f2 *R/plotSim.R
d5ab007494fa8b293dcd03ca909963ab *R/snpClust.R
ea04ad64a7e34475d64f81b310ecfa5b *R/zzzz.R
febeb93ba870da2bb665ec663c1937ec *README.md
8faf250d78a120ba4c7ea2186efddd24 *build/partial.rdb
23a3d4c446120211fcded5a2ad39c01a *build/vignette.rds
ff2e48089e4adf9aa4458e5f4e47e82b *inst/CITATION
b15293fdc09019ddcc89aada210896cf *inst/WORDLIST
0dd6402095e9b02c86b822f0e7421f24 *inst/doc/hicClust.R
33e60816225bcede205b71c9807597e1 *inst/doc/hicClust.Rmd
6545fb3613fd5f5a06168ead31e5c831 *inst/doc/hicClust.html
7341d2906511fc6825b4d33b7a695329 *inst/doc/notesCHAC.R
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ca1cea94e5e6763590cd78155a0c5c8b *inst/doc/snpClust.R
786f3aea1ae42142bb42e2c9a993c51a *inst/doc/snpClust.Rmd
22e814e12e9f4eab5656fb4eab646c56 *inst/doc/snpClust.html
dd6726c6c4b30f3cea804183395128eb *inst/extdata/hic_imr90_40_XX.rda
1e8659d605ac23dbd53c9b00d95bbb52 *inst/extdata/res_adjclust_0.3.0.rds
bd492a22b4201740430f97be6b6c45fe *inst/extdata/sample.txt
abe469addd68c05b93241b7ddf51ab7f *inst/system/createExampleLDData.R
8a7f67643f909f889d8f2efcf825ca00 *inst/system/create_hic_chrXchrX.R
ab247bcc85e5b115f6bb89fbde548770 *inst/system/create_prevfit.R
825859b83c2414848ad86e5d54dda171 *man/adjClust.Rd
58012d3169795ee067fb4a7646229653 *man/chac.Rd
06438839bf6e9400e59dbbb8912788c9 *man/figures/README-adjClust-1.png
162fa8c77e6216fac3af0776e607aa25 *man/figures/README-hicClust-1.png
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47752f9e59fcaf23a38062afda567e46 *man/figures/README-snpClust-2.png
74d070a229f90e2462cd6ead932d8ad7 *man/figures/README-snpClust-3.png
7f080e22a4172eee4c9307cfdba5750d *man/hicClust.Rd
05217c9de802f182c8a89457d5053aa6 *man/plotSim.Rd
e5bbb174601eb059812484c1e495b965 *man/select.Rd
8af7abef10e9887cae4d30ba00eec63a *man/snpClust.Rd
b97fbab365040d67977c8459b09643ce *src/Makevars
0d6094e7affe65a018eab49c308e0dc0 *src/Makevars.win
5de86ba8a96c7fd0daafb683f88e76df *src/RcppExports.cpp
21caadc1a0b95df31285a2fb448554e5 *src/adjClustFast.cpp
6d5fc09b353b9419b5a16dd7bec849ef *src/mainFunctions.c
1b0f8b81bbd63a06ee2233b704ca1888 *tests/testthat.R
c1325fcfef9b8703cac516be58b4735f *tests/testthat/test_adjClust.R
5c7ca1e2b63f578437a7b9bc11dad851 *tests/testthat/test_adjclust_equivalentTo_hclust.R
68d2014ea3d529019765c3cc83d7c0ad *tests/testthat/test_adjclust_equivalentTo_rioja.R
7fd3ef8a7df16cf9c4a6bfff7e66cf94 *tests/testthat/test_ascendingCompatibility.R
d817d026d3afac19becbe6ad4093aedd *tests/testthat/test_chac.R
61b8f398e6a2f9ad3b18b885c42b4ecd *tests/testthat/test_correct.R
0797db03db175984f82f1ae66d4f5926 *tests/testthat/test_corrected_plot.R
01a68f6028de1e29546195d2916b6d03 *tests/testthat/test_cuttree.R
9058a7c110f3bfe64cf284141642db3a *tests/testthat/test_dense_sparse_comparison.R
22cb20f02fbd70ea4aea77fcd01864de *tests/testthat/test_final_height.R
c2652b5e87333f8468cd7ebdab2c5af8 *tests/testthat/test_hicClust.R
5fe3b2fdedb0645172bed79b869ca1f0 *tests/testthat/test_modify.R
52707c132122044b2f7ab5bb3b0017d8 *tests/testthat/test_plotSim.R
c4ae472fa953b630706850c539830553 *tests/testthat/test_similarity_equivalentTo_dissimilarity.R
baf7e9017e4cb526c2713620fe0bd274 *tests/testthat/test_snpClust.R
30908c16f8b90fbdd021460cd99be2e7 *tests/testthat/test_snpClust_NA-in-LD.R
92fdfd4fb2297bbe3b7f830fb822a981 *tests/testthat/test_warning_with_decreasing_height_plots.R
33e60816225bcede205b71c9807597e1 *vignettes/hicClust.Rmd
9fcc7d21a200d49aa4a705c0416d8f63 *vignettes/notesCHAC.Rmd
786f3aea1ae42142bb42e2c9a993c51a *vignettes/snpClust.Rmd
