adecb241cbb21da11f48ea6a57663e70 *DESCRIPTION
5b5d60c8096ff909d52d89747e7d300e *NAMESPACE
fee43549336884b50b78f8e574092888 *R/999.NonDocumentedObjects.R
266ca59377a184b82689c21b86db01a5 *R/999.package.R
248698a498d853578ec49ad20c5c2229 *R/CalMaTeCalibration.R
757a03663af50fe81e017a55ea7af760 *R/calmateByThetaAB.R
3736a31174110cef6d070000caa28562 *R/calmateByTotalAndFracB.R
4693376b5975aa9ffec1fd2f7f79591a *R/fitCalMaTe.R
11e3fe39d5f9ed0de8806e8103f6298c *R/fitCalMaTeCNprobes.R
1ea5b4f3d8c018ea10c988197abfe8fb *R/fitCalMaTeInternal.R
2ee4f30888c82585723201a1230eb7fe *R/fitCalMaTeMedians.R
1c953416aa43e693bc31f96a7aeae941 *R/fitCalMaTeV1.R
2b451e9cc53e174926683a71c98e5ede *R/fitCalMaTeV2.R
56c01a3daf3dbe8acd5c88f46dd7eceb *R/thetaAB2TotalAndFracB.R
431d1e888a93a5125b77cc45dd3465ca *R/truncateFracB.R
5a5b71bc1621855eb8e6ad36f657ee5c *R/truncateThetaAB.R
3b44e08e2f05706573ed4c1268e72068 *R/zzz.R
458e4faa32a82de8d86a00cdfc71dedb *incl/999.missingdocs.txt
a1fd52bc469113d64fd49ab3ce712e2c *incl/CalMaTeCalibration.Rex
985346236bd04a9da7b5ac4123c8b442 *incl/OrtizM_etal_2012.Rd
5f6a11ef535bb0f61d194c9011e52d22 *incl/calmateByThetaAB.Rex
12551e62107e4f206d45ea29b05a7c39 *incl/calmateByTotalAndFracB.Rex
a20664a8aecf107c455bbf7ea90ff1da *incl/testScriptCalMaTe2.Rex
d69aa898fed7c3dfa8a5f1b377e7f6db *incl/thetaAB2TotalAndFracB.Rex
e899ae7b569dbcdf4d689d2f7678aaad *inst/NEWS
c547539d720033d8a8a8cd8674332bdb *inst/exData/myASCNData.Rbin
f446511a78e2bd112d76ab938176d32e *inst/exData/oneSNPdata,2x40.Rbin
2f951fe505af54acff1886da3e848ac0 *inst/exData/thetaAB,100x2x40.Rbin
8de42b4b06784122a7a9e51f564f0f2c *inst/testScripts/publications/CalMaTe/000.README.txt
f947ea874b6d52d84cff0debcba85c26 *inst/testScripts/publications/CalMaTe/A01.TCGA,CalMaTe.R
6913c0d6c1c4e77dded0c1c9c932783d *inst/testScripts/publications/CalMaTe/A02.TCGA,CalMaTe,plots.R
c0342380535670cb94c181708d993509 *inst/testScripts/publications/CalMaTe/B01.GSE12702,ASCRMAv2.R
3f5f179afe057a4659e3ef7b809500b3 *inst/testScripts/publications/CalMaTe/B02.GSE12702,CalMaTe.R
db1b9ef76b5eeeca7c1eb4205f80cd43 *inst/testScripts/publications/CalMaTe/R/001.include.R
68f2afeb5ab36f287bd28a79426798ab *inst/testScripts/publications/CalMaTe/R/001.plots,multiarray.R
6385a71d8457ba5bb6d583a6eb4e4b4c *inst/testScripts/publications/CalMaTe/R/001.plots,tracks.R
2ab9e1cd827a3ec396efaecaed0a62ca *inst/testScripts/publications/CalMaTe/R/001.plots.R
85e62d5812e684b5e5f79c3bd34ccd4c *inst/testScripts/publications/CalMaTe/R/002.datasets.R
28e6ffabba2141ab86e2422a59b62d9c *inst/testScripts/publications/CalMaTe/R/999.onDone.R
b9538ff67439f59c4738a1d2adcdd56b *inst/testScripts/publications/CalMaTe/Z01.plots,byChromosome.R
a33043ba0999b754241caed3f7f93bf9 *inst/testScripts/publications/CalMaTe/Z02.plots,segments.R
3bf68866472371838e3e672edbfc3259 *inst/testScripts/publications/CalMaTe/Z03.plots,byUnits.R
b00e8304497d6d0acd167653f550aea2 *inst/testScripts/publications/CalMaTe/dataSets/GSE12702.R
476626af141f07d6849b259134d2a4df *inst/testScripts/publications/CalMaTe/dataSets/broad.mit.edu_OV.Genome_Wide_SNP_6.12.6.0.R
46612d83e0e83a57006d5609fe04535f *inst/testScripts/publications/CalMaTe/dataSets/hudsonalpha.org_OV.Human1MDuo.1.1.0.R
cade6a53b96b0ff764e14a6c89703c60 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/20120206a,CRMAv2.R
ac95e8da89363caad36e150a33516b8b *inst/testScripts/system/chipTypes/Mapping10K_Xba142/20120206b,CalMaTe.R
6284d2a60e4e42a6134f4b3956ea5894 *inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100518a,CRMAv2.R
3aacf39a0d017b498cc7d3ca8ad16602 *inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100518b,CalMaTe.R
c463972857d06e8f662487888e77f5c7 *inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100620,CalMaTe.R
84436210d78960ed3e17cd90231afdb8 *inst/testScripts/widgets/CalMaTe/001.include.R
4909731b66965afc6d950d6dfd6c20dc *inst/testScripts/widgets/CalMaTe/A01.TCGA,CalMaTe.R
633f109617872a7e30a8e8ae7ee87333 *inst/testScripts/widgets/CalMaTe/Z02.plots,segments.R
775839417ee6f40161da956b5288e725 *man/CalMaTeCalibration.Rd
fa0864fb9e7d2b3742a5e77f694b4c15 *man/Non-documented_objects.Rd
59820c194ae14231a9a3d444c2144e95 *man/calmate-package.Rd
2399e758fad63439635fcd1eae6ade67 *man/calmateByThetaAB.array.Rd
3c1acb5297d4480ec2dfe9ffe1d4efe3 *man/calmateByTotalAndFracB.array.Rd
087dd4373e6d5a3bac11248464a245c8 *man/fitCalMaTe.matrix.Rd
364759f508e7ed38486a1d69bad3f4fc *man/fitCalMaTeCNprobes.matrix.Rd
d711d234fbbcd734011c5427dc6d64f4 *man/fitCalMaTeInternal.Rd
0087ea44e96bfe7d895f04e19055cae4 *man/thetaAB2TotalAndFracB.array.Rd
793c74d04043ddb92c2d32d14bfd9b3d *tests/calmateByThetaAB.R
280d02eb300f72d418dbde78b0def366 *tests/testScriptCalMaTe1.R
