760f9158e3e5e0f46bbd002118156ca6 *DESCRIPTION
63822be6e50d82fbcea679a78483a762 *NAMESPACE
8eab5ce5c19eb9c4233f988959914efe *NEWS
68a221fe2f20ada2a9850e8a6299f87b *R/dataDoc.R
b47d4464fd75a4a75026439997176646 *R/dynrCook.R
482377b114e20dda5ecc163a6a7ae2f8 *R/dynrData.R
034ea476b3576621e33c7c7688d9242c *R/dynrFuncAddress.R
fe783e285813d71b8de8af397d89523c *R/dynrMi.R
bfd01a0bb5eb6b4205ddca1c832cb2ad *R/dynrModel.R
f7686fe04176f896d2fa1ad25d034255 *R/dynrModelInternal.R
907a3a909f655ec7692ec5ab0d25739b *R/dynrPlot.R
03f0f1e1645e1757ee9b3c32191a9aa6 *R/dynrRecipe.R
73153c29872d3265f462b09b435a2224 *R/dynrVersion.R
63a2b3d53811033e637db22f83164071 *R/dynrVersion.R.in
7e78ea7d8c38c36ed4fd765b923e242d *README.md
ee93bf5377266d43799d68e67e1d64c1 *build/partial.rdb
8143f2c954f91aaa1a509d8e3981cec4 *build/vignette.rds
c3cded853a2388ad53569a7105d1c1e3 *cleanup
2a2f823b986ebabb8a524a946d960277 *configure
da1b0467b7dac8a307208102b79b3e02 *configure.win
ffa8e7e8e8beb364348e9248330b0baf *data/EMG.txt.gz
42d2093142d41f80a9c2ca1b6aea10a1 *data/EMGsim.txt.gz
3d55381a5b03bf4fc753e8e0ebe66291 *data/LogisticSetPointSDE.txt.gz
d9dce7ea7e4d2e6377651492b4884571 *data/NonlinearDFAsim.txt.gz
f1b77d044db0a917f7b75b465a650882 *data/Oscillator.txt.gz
d8969682d4594b8842f061c7c86da9cb *data/PPsim.txt.gz
c7ae98815490572d4f527b886cbea4da *data/RSPPsim.txt.gz
dd9ca78f3a3b3ee2b417d5b3a387aa6f *data/datalist
851ea6c97cc38caca344f34d09303530 *demo/00Index
52892c91d8020d1a00830e729cd1e14e *demo/LinearSDE.R
ff45de336f5d86fb6e007f1bb6985795 *demo/NonlinearODE.R
f7d04cb6fc0e1d89aa410573a8dc3d67 *demo/RSLinearDiscrete.R
9821f25f877056a6d36f80d9970e1992 *demo/RSLinearDiscreteYang.R
361d1ff449e7212ed8c375e7966af3cc *demo/RSNonlinearDiscrete.R
b4af7c6b1c0b2c6a65a706a93e8a4980 *demo/RSNonlinearODE.R
4bc8a56489fb26aa6bc9d30531f7ca09 *demo/SDETVP.R
4bfee1682f34790cdaee856c7282686b *demo/initialExo.R
00dc862f91d1815b3034765bd320bcb0 *inst/REFERENCES.bib
1708170f7d77d66128de23e520d717ab *inst/doc/InstallationForUsers.Rnw
a1469d9176c937f0161149359d90d0cc *inst/doc/InstallationForUsers.pdf
2938c6f763caeabd096919464580de56 *inst/models/passing/LinearSDEWithChecks.R
e71266093722618174b4751cab01078f *inst/models/slow/MCTest.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSODEmodel.c
d697566c3d23b29fd917fe49db8ca727 *inst/models/slow/RSODEmodel2.c
8ef3d488a81bce4d8471577d544253fe *inst/models/slow/RSlinearODE.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSlinearODE.c
dfd436323879f09fb9c8ef44169d4d07 *inst/models/slow/data/Model2T1000n20batch1ODETrueRegimes.txt
7a3f661bf7ae7f53960740e634a7a329 *inst/models/slow/data/Model2T1000n20batch1ODETrueStates.txt
a8acec45b1d20fee4a868eebc9fce66d *inst/models/slow/data/Model2T1000n20batch1ODEsimData.txt
3b205070cd03ebac5f9f76bd89837a07 *inst/models/slow/data/Model2T1000n20batch2ODETrueRegimes.txt
21cf61480f4e0db723407e793184a536 *inst/models/slow/data/Model2T1000n20batch2ODETrueStates.txt
1907b6921c9d805b65226c2c7b18f55a *inst/models/slow/data/Model2T1000n20batch2ODEsimData.txt
ca49445b860c7fcd03b7b09cee1e2691 *inst/models/slow/data/New2CovT500n10batch1ODEsimData.txt
7128bd88e19bbdf6716ca23ed8212285 *man/EMG.Rd
be892d2292286fa613bda0094cc75efb *man/EMGsim.Rd
b468046cd63f08893cb9e34e1c4bed8a *man/LogisticSetPointSDE.Rd
59ce9eac2ceadf3fb4e84e170d87955d *man/NonlinearDFAsim.Rd
c2d01d8c1ee87608266807b7dd58ee15 *man/Oscillator.Rd
e96ed728f23889a77638299296fb6f38 *man/PPsim.Rd
1e7f28082ce28ed296b62dcf1e011ad4 *man/RSPPsim.Rd
5fc26b1cba2b43a44cb4be88dcf75954 *man/coef.dynrCook.Rd
2921579430491e8a069a53137c9816cc *man/confint.dynrCook.Rd
feb60ec40b302524b1993b7f5b12b1bb *man/diag-character-method.Rd
0d9c0ff74308c9f2bdbc3c089a807dad *man/dynr-package.Rd
abfc301ec26e373d2656e3cb7122a862 *man/dynr.cook.Rd
587005d6f88b1faae168ac7b9ad98331 *man/dynr.data.Rd
4e1d50a00c700f47bdb7f9d1662d5911 *man/dynr.ggplot.Rd
0b1a16971952269709f09cb2d3b37e53 *man/dynr.ldl.Rd
21d6b400a73a1181f9a34ff5d78720a2 *man/dynr.mi.Rd
d50025b7b3f00925218aeef1b3b550ea *man/dynr.model.Rd
466f0e70ad0db574c90c6dcc83ee8a8f *man/dynr.plotFreq.Rd
57e2f6cd1ff2c27d2e913e114e6655d2 *man/dynrCook-class.Rd
2654c1f840b270d51f8acbba772df262 *man/dynrDynamics-class.Rd
1d065135820d349695c7c619aa5d071b *man/dynrInitial-class.Rd
86fe316452d0857a26ceb958be43b78d *man/dynrMeasurement-class.Rd
1aa7925418f867769408c8652c00f8ae *man/dynrModel-class.Rd
025ad6198e7e4124ed187cf7db9ee792 *man/dynrNoise-class.Rd
69ca8085f4aacec4bc80fd52e80d16b8 *man/dynrRecipe-class.Rd
f4d6a514e8c2a31cc02cd642831f0036 *man/dynrRegimes-class.Rd
f7ad853c6571b101c236ebaad1e2a143 *man/dynrTrans-class.Rd
f4f30eec39e8562e373d62d555d181d0 *man/internalModelPrep.Rd
48efcd645a3d4d1e1f2eea952b0b9123 *man/logLik.dynrCook.Rd
de42b0805c7b2ec735b9a544aa0eacd5 *man/names-dynrCook-method.Rd
1f7377173dfbf437326241ed632da415 *man/names-dynrModel-method.Rd
233ab09baadd87df324b0f73f2b39328 *man/nobs.dynrCook.Rd
fce73d37c684909f33cf19e98780fb46 *man/nobs.dynrModel.Rd
4c55ac5f83e0021e23fdcbdeee022da8 *man/plot.dynrCook.Rd
81ca1b7a9f69c46d80d3ad309ccbca72 *man/plotFormula.Rd
410a4dee4f6504080984cc1355db3e79 *man/prep.formulaDynamics.Rd
4ee7b7c30e128b3865264df2088ea086 *man/prep.initial.Rd
17293fc80d58f4c91774b7cc73d54d66 *man/prep.loadings.Rd
bb43d4c9c010b3d56268f3f464f51a2b *man/prep.matrixDynamics.Rd
e957e257aa21779d8b4518935f96e280 *man/prep.measurement.Rd
0ec50cb8f202948e0c9b801d9745b12c *man/prep.noise.Rd
ac8bce795a8d3163d435546556cdeadb *man/prep.regimes.Rd
e68e77c6a4fbfd0824da7c2ad3c20865 *man/prep.tfun.Rd
6497a22536593d2c4c4ba8fe77e4388a *man/printex.Rd
631fb71fac87a808c732f7c815c2592f *man/summary.dynrCook.Rd
7957af0bbd2a1f6b8ff7423bbfbf6443 *man/vcov.dynrCook.Rd
27631498103b08980fc77fb027f309ae *src/Makevars.in
9ad2e7f37645e8bae554f2727cb35826 *src/Makevars.win
43f935651d16579dda9f5dc7cfd19a41 *src/adaodesolver.c
e9f1df8271427e034532757fd7948218 *src/adaodesolver.h
739f57177e0f0a7e4e2d83d929324d9a *src/brekfis.c
4151b2b2307eb872912be85515f25138 *src/brekfis.h
4ebba1b2bb844504801ad2b1241ffd6b *src/data_structure.h
7ff8e0e77961fcb64c19fad638853773 *src/debug_onair.sh
c46261ee9047f43f539d7b42f888791b *src/debug_onmac.sh
803b24b68420d03c5f3aec721877a04b *src/ekf.c
3422c501f13347fc8015d28686315b18 *src/ekf.h
76b395e99e58d6004a775b21da5ea8ba *src/estimation.c
4d9fdae6f0f480cf787a54c81de70c7f *src/estimation.h
7790845d51f3c908b28602e2d236e627 *src/general.c
d2354e9c9e3c4aca45a68cb944e13f40 *src/glue.c
bb16bd76c93231e6ea426b82c0beab59 *src/mainR.c
85a2174765401994b12d74867211b6d6 *src/mainR.h
69427ffba500ac3da39fbfc454cdae3f *src/math_function.c
1fd33555438c3f4d847b22be88002056 *src/math_function.h
9bb08148c25b9115b015618cb20910dd *src/model.c
e3595686f63b4676e96e30959c61c8f3 *src/model.h
fc1d67946a060243ac0f0ac75bc4da2d *src/neldermead.h
2a77df5d65c208d368fa7102f58fc891 *src/nldrmd.c
4b7910ec3200b81a25ad63c7ad1cf7a9 *src/nlopt-internal.h
2ff94eaad5eaed51d937d589eb673897 *src/nlopt-util.h
6c225833bcda94a97ea0466284ed1630 *src/nlopt.h
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126ae09a41dbca7a51e05425033340a7 *src/optimize.c
1704e7888ca44a3aa0647ec3db7def2d *src/options.c
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533c2a9397de70a6c80c733ea0c3b26a *src/qsort_r.c
9914ae83064dfcd800182b253db48266 *src/redblack.c
908320b8131a3b49735bc933414bf1bc *src/redblack.h
973ec27866373b6d0337bef743f72f3a *src/runmainC_onair.sh
d65a8ace18e722b0f2c7647055cc6077 *src/runnlopt_onair.sh
8270bf070cb54b6c169e210510edb240 *src/runnlopt_onairwin.sh
7fcb98c63538e5e622decacb7deac1e4 *src/runnlopt_onmac.sh
5457a451a9d8fd14cc13deae0329a15b *src/sbplx.c
9036143892407b2e366e927e337c7072 *src/slsqp.c
a8379ca1ec5419136e85c9e036c495e6 *src/slsqp.h
e2f945871653acef7489996ca2f000c0 *src/stop.c
26fa9c1680e4398abdc54307b610bc34 *src/wrappernegloglike.c
8cb1ab0ccb36159adf69b14e042c804a *src/wrappernegloglike.h
b5f93d62614db4a11ee1361736ce9fe5 *tools/buildNum.sh
f11cb88b80d383ee81b933b8629c2188 *tools/configureAutoConf.in
6f5c65804b070f7e014e01ff57e50d09 *tools/prep
efa1a6d7d916998d5131bce97f8a782b *tools/roxygenize
b4d57d694234f421c236f7994c3a878f *tools/testModels.R
1708170f7d77d66128de23e520d717ab *vignettes/InstallationForUsers.Rnw
