cea4e5b2f742cc09f3734bebf9497f36 *DESCRIPTION
b193cbd16a933e0a231dbfcfdc8f362b *NAMESPACE
9668424fccdbc070cf97d82ed9f41ffb *R/E_step.R
e41de56683d052f5901b4847a730152b *R/E_step_final.R
08cb48dc21565189dee1b4b4f5e4eb79 *R/E_step_final_FA.R
81b2d02f27c710285e5210d25551c796 *R/M_step.R
ba0037799d97d43d70e4a33716032503 *R/M_step_FA.R
5d85e9285c2c49177ce4561e899f1b09 *R/RcppExports.R
76896fec80f05ed8a4ca1cc2ca7cc731 *R/SetClassDefn.R
4c93ce4d3fff8b58c32c339e6ab216b2 *R/basal_dataset.R
9eb924816915af44f60cc1cb4a6eb10e *R/checks.R
db9a0df9c6e714ab173373f65447700c *R/control_options.R
bd4849fe40d8817e3be5ee007e06d885 *R/coxph_utility.R
7b1c9e74bccaa0991af2a6bd0530b552 *R/estimate_r.R
9cf15fb7abf0eb4b990a69b70e24d470 *R/family_export.R
889af681c9573fb42c0f38c0def53b67 *R/fit_dat.R
f6628d98dea63f4fec007099780a1224 *R/fit_dat_FA.R
ccf3aabdf66c3325024578945ca45a80 *R/formula_data_edits.R
09c5b5fde47a062fb836dfdab9d9cff3 *R/glmmPen.R
2c771ccbc8819ebe2229e1ad80b4b097 *R/glmmPen_FA.R
d9220c640655098527ce7861e27ffa6f *R/logLik_Pajor.R
35e3870ae74291c139b46c61cb0a58f3 *R/logLik_Pajor_FA.R
c07f31b4ade2499c61437a07dfc27e5c *R/methods.R
cc1532cd3baddcbc99a743e6d2575898 *R/phmmPen.R
0bd6ab2041f870d7b2dcddcdbf2da167 *R/prescreen.R
e9502d3b8a2296095dc3ed8471590e42 *R/prescreen_FA.R
91d6bacebd47e5ec7de58c186e882e3f *R/sample_mc_functions.R
04575f82ca3fcfa3e7ac6a584dcf1077 *R/select_tune.R
5b36fb76c277b71d73a742aefeff75fa *R/select_tune_FA.R
de142c11991600ae1c458fddf4667830 *R/sim_generation.R
604ad4e09e2cc44c30b15e2f3ef27bfc *R/sim_generation_FA.R
c9ea036923f88c84bbc2fd042eac7536 *R/sim_generation_coxph.R
1754a58f90640b3adf0e64e0c4835bef *R/stanmodels.R
bc9f927ccd25e9a528f943c0b1538d90 *R/var_start_init.R
c06b4593d1a3b496f92333671e032ede *README.md
1cc60bdd8610449d30184e0bb374bf46 *configure
363506993327ae3b7de4216fa3a1aa2b *configure.win
3240102badcd0213ee167e2ea2590852 *data/basal.RData
f81140bf29188804d8cabed4065faa28 *inst/glmmPen_1.5.4.4.pdf
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
bf52edfc34a4bdef21249b393ebd2a2d *inst/lambda_check.R
800c7ab7bb8b7c1f06eb2ec53bbd4ebd *inst/stan/binomial_logit_model.stan
edfb1930440fdb7d4b40fbcf94936d08 *inst/stan/gaussian_identity_model.stan
0a69072d1af781bf21b9b4abb3ed1a29 *inst/stan/include/license.stan
f6ac7e125e3f0a80db62ec0012502116 *inst/stan/poisson_log_model.stan
fb73dc687900fc058102fd27a1ca4c82 *inst/update.R
e5b8cc0f80d148727d4506309731d86e *man/LambdaSeq.Rd
a1022035fafd2dbbae344084283ed179 *man/adaptControl.Rd
dd9a662c89b8df81bf4f3ac81a88f196 *man/basal.Rd
ba295520c814bb6c05ecd99236bac2f0 *man/glmm.Rd
a56ecb57c54d25c06f7770a40f581d6e *man/glmmPen.Rd
25f993cec19e4d697aa5f9f3c16021f8 *man/glmmPen_FA.Rd
32f3cae014b799e14be8156eb7d13e84 *man/glmm_FA.Rd
7bec561f360901f45db4fe82495f9065 *man/lambdaControl.Rd
f45497ecce6fcbe1230f50cc4997505c *man/optimControl.Rd
f6e6af6e959627e137e94c426ef62a05 *man/pglmmObj-class.Rd
1af91695527ea1e402d1ddeafaf844e3 *man/phmm.Rd
7b9aec6cf01549cd9e0fe9197b270291 *man/phmmPen.Rd
9fc85ea0028a1b21732d263606375027 *man/phmmPen_FA.Rd
d18583f7d75a8a4085ef743c8c79a257 *man/phmm_FA.Rd
b9519244e009e2ed0ca05f7a99b0b800 *man/plot_mcmc.Rd
5c6a3e1992cd00428a88966841c3d012 *man/rControl.Rd
ba5af06198ab9180dd14050425bd9e9e *man/sim.data.Rd
15f4cb9ca4ddc35090de400693b9c845 *man/survivalControl.Rd
b98a9f0ceded4be273f8734953263adf *man/survival_data.Rd
bc71de374ff08502b57441efc1825003 *src/Makevars
3c1f7c9e5e18d9f22b56fcce42f2908d *src/Makevars.win
352a1042564198b7f59a66065bfe4023 *src/RcppExports.cpp
6990d8d0a9db191fcda5e5ee05d6776f *src/coord_descent.cpp
cad2b75701d6abad83f8405aa5151bf3 *src/grp_CD_XZ_FA_step.cpp
960d2c04e1ccacde433470885e335bdb *src/grp_CD_XZ_step.cpp
c6a5fe72b3ab45d777a2369d232134bc *src/maxprod.cpp
f904296acda1b863e5df382ab5d54f68 *src/penalties.cpp
3c77965c41a0ded4474793c577534605 *src/pglm_fit.cpp
7b6b7ab59186d8daddd5e427c218306c *src/sample_mc_inner_gibbs.cpp
e415c7572e99dad15ce70561c956825f *src/sample_mc_random_walk.cpp
462f15cf50d0fc1b5d1bfb8dbf32cd9e *src/stanExports_binomial_logit_model.cc
3e1686236da5d4ef06edb2716ebacf63 *src/stanExports_binomial_logit_model.h
3aa444add403b43abc50240d85582693 *src/stanExports_gaussian_identity_model.cc
8ce1026a54da4d50f43806d512e52a1f *src/stanExports_gaussian_identity_model.h
c55f67a8939501f03085a33da518afbb *src/stanExports_poisson_log_model.cc
7f317ee6235e8aff2d82c2923c380bcf *src/stanExports_poisson_log_model.h
fbad34bcabac7f70303796022cc6e6f5 *src/utility_CD.h
ddcea2487a3ad39e37546a47cf24a0ac *src/utility_FA.cpp
e7103240f271d7a66d0317e71a2cf654 *src/utility_glm.cpp
d21b973817f9707ff4b788586b0333a8 *src/utility_glm.h
24f5cfb7c9a46f5ff76f5cbbf730f6bf *src/utility_grpCD.cpp
adac520570a035d077950c45146b4fed *tests/testthat.R
de69181caee6cea89f9fa6562a6ed00c *tests/testthat/test-args-input.R
97da9b0409bb54f649f592bdd50748df *tests/testthat/test-data-input.R
