% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/process_step_direct.R
\name{process_step_direct}
\alias{process_step_direct}
\title{Direct KO Processing Without Special Handling}
\usage{
process_step_direct(module_abundance, KOs = c("K14126", "K14128", "K14127"))
}
\arguments{
\item{module_abundance}{Data frame containing KO abundance data with required columns:
Orthology_Entry, Module_Entry, Definition}

\item{KOs}{Character vector of KO IDs to extract (default: c("K14126","K14128","K14127"))}
}
\value{
List containing:
- abundance_table: A subset of the input data frame containing only the specified KOs,
with original module metadata preserved
- abundance_log: log
}
\description{
Processes KO abundances directly without any special scaling or aggregation.
Simply extracts the specified KOs from the abundance table while maintaining
the original module metadata.
}
