89a0448b1f0efbfb14a84af8db11f63f *DESCRIPTION
f4352f59a080033ad9e938d9f0aaa912 *NAMESPACE
8a277f131a00df86470f2a4273f87081 *NEWS.md
3beb5054b599c0d632a521f7efd70898 *R/MizerParams-class.R
62ffb74b885eaf0e7f870c89ca914da0 *R/MizerSim-class.R
57065b340e67d47f106d8526ef99ae1d *R/RcppExports.R
39c09fd3c34d685fba235d3ce164c926 *R/age_mat.R
95aa4b880199bb4dc1c771206321ca2f *R/animateSpectra.R
e593be0ca4725c16e94f6b82ffb12b7d *R/calibrate.R
9fcc8082b2f2e35605459dca9d7890d1 *R/compareParams.R
8777f21d803b24b28b5518ba5b3f5789 *R/customFunction.R
df8c2f436b7a55d4c48a2f3838e39f83 *R/data.R
0c40e2c247fb55c1db58a2b2e673ef92 *R/defaults_edition.R
76c67f3736d48bd7a40e75ec410cf6dd *R/deprecated.R
ed2a004620b8217905033ad7e1ccb7ba *R/extension.R
64ef0846ce9ca4d269b556feaa13dccf *R/get_initial_n.R
96348046433b212829532be5423fae70 *R/helpers.R
d855bbb781b8928b9c859e9e9ccba253 *R/manipulate_species.R
2daddd8c2e5b59a44b8114774848766c *R/match.R
02c5294eddaf099b51ea7966c17a753c *R/matchGrowth.R
a5895a6efbeb876b981aa7941072b6c1 *R/mizer-package.R
c1ab4ed152a3e26f0f5d91ac1b924e83 *R/newMultispeciesParams.R
cad1fd43e772df6854c29f90b7db93d3 *R/newSingleSpeciesParams.R
4d2c98d54c2d320f6c9b1b481606d044 *R/plotBiomassObservedVsModel.R
17ef7c2d556014f15b7a25a1e28dcfe4 *R/plotYieldObservedVsModel.R
d0e95f0bd063dc0ba8acedb20c5eaa93 *R/plots.R
2d6b437caf73e2b8a3dd00daf4646bfb *R/pred_kernel_funcs.R
9c5bfc6df6e9be449524afbe04b432b5 *R/project.R
6e4e139f4cef32cd88c7fb56add06d9a *R/project_methods.R
9344036d5a47b07829fc7bb3d9381e70 *R/rate_functions.R
c928e4f39882f2ff98d553781227152f *R/reproduction.R
b1a4a5600eee7037c1cf129448958cd9 *R/resource_dynamics.R
e914479a2f2d0589dfd2b39b7d427c74 *R/resource_logistic.R
8c3ef3be0ec2182dce5560f789a646bc *R/resource_semichemostat.R
46ff7358b4269a3ef3a7a6f5fa77f1fd *R/saveParams.R
34f39f0019050087e812db226f29f864 *R/selectivity_funcs.R
312eaea339a0e56df8f18d8717777a46 *R/setBevertonHolt.R
2a166e3dc3f362f0fb461a6ad19aa9d2 *R/setColours.R
892415888a1f4f1a8fbab020c77eca3c *R/setExtMort.R
c1af5aa489d624aa0dd9ae0306e8eb1b *R/setFishing.R
03982e1d339d935f2d87e27e0298d239 *R/setInitialValues.R
1a3491ad5f370bf641298e549bd2375c *R/setInteraction.R
a3066c85db425c68c9342cd5c51518a6 *R/setMaxIntakeRate.R
ecbe5ad96ffb0d569e04d9b349bdf087 *R/setMetabolicRate.R
333d2769c89bdc3d2660f80c873c5472 *R/setMetadata.R
b38d5c00e582de12302ffd22c754b0ca *R/setPredKernel.R
63400e1c6c543954f4b52d5b75fc4258 *R/setReproduction.R
267ca90ce24026a55f6f7b599d6631e0 *R/setResource.R
02fee3524bdb825d15375c678ff27483 *R/setSearchVolume.R
b90c093e69b808b88b97becf3ceaf571 *R/species_params.R
a058b4bd6f6499012f3728be774a326b *R/steady.R
c34706d620d80db0298e1b91a93d3886 *R/steadySingleSpecies.R
875aab4701652e487262aacd8dffce25 *R/summary_methods.R
0a3f928c306325da7759828be30381af *R/upgrade.R
e7dd880335e31ecb56fd93accc0421ee *R/wrapper_functions.R
79a7b8fec4d8194c1a4afe6dfae82e9e *README.md
a660c4f20e7664607c83d35a0e136e6d *data/NS_interaction.RData
8ae635a8c537a0bbd68dc89cf3f851f2 *data/NS_params.rda
a98462b209c82e7316e67a3432d103bc *data/NS_sim.rda
892e3f1db9a6e7448576a31681d8aa35 *data/NS_species_params.rda
cae16657dd179b130cf297106b45b0a7 *data/NS_species_params_gears.rda
bd6f370325d3aa8ed3bd9965f9f98956 *data/inter.RData
b34725564ee804fc4587450500689767 *inst/CITATION
1cafe15d677a5ac3fe8b9ba0a4ffa59f *inst/WORDLIST
d16f1a9fe447297ef10712710d3bfb9f *inst/examples/supplementary_material.R
e223dcdb80d662986aeffef755c2ad7c *inst/extdata/NS_f_history.csv
746cf00deedbfdb36ba358f8be0ec155 *inst/extdata/NS_interaction.csv
c013357d067dc7eb9bda479667871947 *inst/extdata/NS_species_params.csv
a0f566e18b12bdcc1329558124db800f *inst/shiny/selectivity_effects/app.R
02fa9e9482e1837cd3842dbda86a3a81 *inst/shiny/selectivity_effects/hake_mullet.RDS
272990d5e960f8a1e1d6936bf0fb9ec3 *inst/shiny/selectivity_effects/www/logo_minouw_blue.png
68f68b815d9f1e646c3153d861b3759c *man/BevertonHoltRDD.Rd
e0e703fffa095a6edf44a0f36353c9f3 *man/MizerParams-class.Rd
3431db1d41e9ca8c1295e08a9f7e3a6f *man/MizerParams.Rd
e83425fb083ab1a3f8af5ede36e0a808 *man/MizerSim-class.Rd
4ed00c0b85f577be66ed885d9eaf1333 *man/MizerSim.Rd
4e0cdf7d83329c7e4fa4ce0882253d78 *man/N.Rd
da433c7ef6203e201440e36d472621fa *man/NOther.Rd
c9a7d1762d142d3db43a0b01da80f4d3 *man/NS_interaction.Rd
b97b38d610de9f2aa9c5a47e7ac3b0cf *man/NS_params.Rd
ec8fc31be8ba900ab65797701780e9d3 *man/NS_sim.Rd
3d444baeb56be82ce264b9ff3ad946fe *man/NS_species_params.Rd
db6a5dc1ab91f7d7cc9d7776c52ddeda *man/NS_species_params_gears.Rd
e7be2baf6599fa09c9683ba47dec2a94 *man/RickerRDD.Rd
78e31949f0147101bf2f1f5a54a9ba7a *man/SheperdRDD.Rd
81ef959cc24791d8fa4a4a51534661f2 *man/addSpecies.Rd
53d7c35b0e94fd63092c8cb8e7443cc0 *man/age_mat.Rd
6a6463afed96a1865851b7fe9f631653 *man/age_mat_vB.Rd
64f970439a8e7ec176f2ae904d31b846 *man/animateSpectra.Rd
76a9889353e7c737f7401d099502958d *man/box_pred_kernel.Rd
df8ea4549f7b3659070bb4b16c1e6ba3 *man/calibrateBiomass.Rd
c5c84b76dd5266f460e81ea7e6b8cf66 *man/calibrateNumber.Rd
cbc7078f4d133319ba560a1a0fb719bc *man/calibrateYield.Rd
d18ba8fad64decde15ba3dcecac358d1 *man/compareParams.Rd
68263e19ffb5f494be7651f38e07c92f *man/constantEggRDI.Rd
3c644abe9f7c90760d196bec761b1d41 *man/constantRDD.Rd
36ab61b7e90650450f656ffc92734f42 *man/constant_other.Rd
f1c0d12653763fd6ad7ebe20d21e7445 *man/customFunction.Rd
9cf911074a799e6628ebd2abbb5073ba *man/default_pred_kernel_params.Rd
592cb0d9c530aa14c74f01d245f0dc9c *man/defaults_edition.Rd
6ead65364272cb469f42b9caf4b7ca44 *man/different.Rd
0fa917b3118612cfca72cdc0943c088e *man/distanceMaxRelRDI.Rd
bd170b590df59c8259a174a8763cc3fe *man/distanceSSLogN.Rd
9ec00653990a02559a869faa696fc8a9 *man/double_sigmoid_length.Rd
effc00c93e444486e19dc1ed61e53e37 *man/emptyParams.Rd
8fee0982f4c52b877e84a4a9f8c22dee *man/figures/Beverton-Holt-plot-1.png
cb1e46f469cfbbbde29c8b5113e1d789 *man/figures/lifecycle-archived.svg
c0d2e5a54f1fa4ff02bf9533079dd1f7 *man/figures/lifecycle-defunct.svg
a1b8c987c676c16af790f563f96cbb1f *man/figures/lifecycle-deprecated.svg
c3978703d8f40f2679795335715e98f4 *man/figures/lifecycle-experimental.svg
952b59dc07b171b97d5d982924244f61 *man/figures/lifecycle-maturing.svg
27b879bf3677ea76e3991d56ab324081 *man/figures/lifecycle-questioning.svg
6902bbfaf963fbc4ed98b86bda80caa2 *man/figures/lifecycle-soft-deprecated.svg
53b3f893324260b737b3c46ed2a0e643 *man/figures/lifecycle-stable.svg
b9626043cdd3e1a1d437892c4391ac47 *man/figures/logo.png
dfe5732cc6046fdc87001f00cd2b1aaa *man/figures/mizer.png
84b2c15308e90f959f69fddbafed2142 *man/figures/mizer_twitter.jpeg
70e8acd31993b8c704659e79d60927a5 *man/figures/unnamed-chunk-4-1.png
f83fd96bf97b0bad00d593b657fe3cfd *man/finalN.Rd
975f884a1b2c0a62c8f2de023e1e20e6 *man/finalNOther.Rd
b3593f78e2b1b6a152923b6bad2b153b *man/gear_params.Rd
f31a7e26d8ec40d9fcc97268f7520067 *man/getBiomass.Rd
61e748df6ee89b4c1f6a332a8dcda39f *man/getCommunitySlope.Rd
6d18a3f47647701294dcaecbe1cd7001 *man/getComponent.Rd
074b46c6fae98c3b6cae9fb275116a00 *man/getCriticalFeedingLevel.Rd
c2087fbbeb8b86c5ba6ffc1032ad0921 *man/getDiet.Rd
508182027d1542f5b144ef54b7fc83ab *man/getEGrowth.Rd
2d84a2748727c5df28af1c24273dcd4e *man/getERepro.Rd
58c8c5489ab08026c4a603b6da7cd17f *man/getEReproAndGrowth.Rd
8289801df1a513eb290616957048c0ea *man/getESpawning.Rd
e8c4397f9d059d216375f4c35603ad0d *man/getEffort.Rd
93b1944b8636c82f711b58e65fcadcf6 *man/getEncounter.Rd
292d5b306ebcff9cbf2d4f0cbc4c110c *man/getFMort.Rd
f866e616796e2c97d674fd9461bf6b07 *man/getFMortGear.Rd
520b9277a6a1e5802bd9819ff957b842 *man/getFeedingLevel.Rd
644b179487425ffc551031f2fcb7c115 *man/getGrowthCurves.Rd
015c4e2746db0d6adc5a71597cbd94a0 *man/getInteraction.Rd
7dc03cce6a049ce04da0912e3af5ed9c *man/getM2.Rd
6f7e27ef61c2bfdff5ae1d7d81a20edd *man/getM2Background.Rd
6331a3500b5a7cb98b9af852ee4e07bb *man/getMeanMaxWeight.Rd
2ee5de0f297d6be83d295ac65d39591c *man/getMeanWeight.Rd
401211de0a894426426430d2728dd41b *man/getMort.Rd
349f5184839301b538ee9db2b0741b37 *man/getN.Rd
9a0b555f0c3674f50a8689051f3a3cba *man/getParams.Rd
65f2e709986b237b6cf62b470f427b51 *man/getPhiPrey.Rd
2ddcb4663ffa8349fb2e2118e5736144 *man/getPredMort.Rd
f6f6eafb2ee939a5bb6e3d019172419c *man/getPredRate.Rd
6c0b8943ee5fbd65c150e4288f6b9667 *man/getProportionOfLargeFish.Rd
d91d0ded261f74b859b931bfa8646fe6 *man/getRDD.Rd
d3afc8683ac06262db16f23569c04af6 *man/getRDI.Rd
8f34da190606e21cb1710f786e539a4d *man/getRates.Rd
ffbb6451ec67d6e63b72f07edc11d071 *man/getReproductionLevel.Rd
f3106714301f0defa50ac28ad88296d8 *man/getResourceDynamics.Rd
fff8dd2391be0b00addf35bd85f32a1d *man/getResourceMort.Rd
087aed3f12454e9c1019a1a07838e8c9 *man/getSSB.Rd
c1f90391e66840d77d30a4229a7eb0c5 *man/getTimes.Rd
93a89e064fdedd5e8b18f2d40c933b0b *man/getYield.Rd
52c6cf68b4c769cad18fc27b1ed88fb0 *man/getYieldGear.Rd
6a63a0258f769314a818a619fcaff163 *man/getZ.Rd
e9887ccbf755952aa5623bb0f9982727 *man/get_f0_default.Rd
9cceeca86be059eb352017aff75bdea2 *man/get_gamma_default.Rd
1d750eb9c4b02f2948a52fcfe578510f *man/get_h_default.Rd
6ff173741d81dcf144c1ca3a6a8db808 *man/get_initial_n.Rd
d9f502664163a4a9a8347f6292136a44 *man/get_ks_default.Rd
2a3d417b780a8617e37c9f51df037915 *man/get_phi.Rd
94552c784587f6a8f6bdc38b86dd2a8a *man/get_required_reproduction.Rd
645ebc2b7908bd6279dd98f2989830ec *man/get_size_range_array.Rd
3ae6f00fe629728afccf7eb99612c158 *man/get_time_elements.Rd
ec290713557da44381b22250b268895c *man/idxFinalT.Rd
ef5976b59c8f695b4409d95e279b8157 *man/indicator_functions.Rd
78a0e700a1cb5b241858a7753c605c24 *man/initialN-set.Rd
c76ab564dec4d34930d18b67841088dd *man/initialNOther-set.Rd
5c8f313e9bfc7b3bd511688368460b0a *man/initialNResource-set.Rd
8d0412fe967df0aa82fb54aeb2023614 *man/initial_effort.Rd
189d2a96d017aa84489eb8f901581621 *man/inter.Rd
827e9645c90d355fd7f69e03d88f0621 *man/knife_edge.Rd
ac4b2a1e6ede5b70d1f99595c2415b63 *man/l2w.Rd
1f84d69234557881a0a0cd491e4d1ad0 *man/log_breaks.Rd
3065f4fafd19c147be5ec41ff242d6b1 *man/lognormal_pred_kernel.Rd
e4594b3822ff4e2fcc621305a4a42e56 *man/matchBiomasses.Rd
9a528917f412fc51d8247bdf8ed00062 *man/matchGrowth.Rd
c45692bed9fc974052701c76013a87fa *man/matchNumbers.Rd
f4601b368ab9e8c130e859e8de78faa7 *man/matchYields.Rd
6cc5e4cb20c9b339793390c8211603a1 *man/mizer-package.Rd
308bdf307bd1361950124a247695ad52 *man/mizerEGrowth.Rd
bc2de90c6345038853953cd0fc206f57 *man/mizerERepro.Rd
172b1295108fbef752fe92a468c4d54f *man/mizerEReproAndGrowth.Rd
c3e176e712267155fb14739e77e3debb *man/mizerEncounter.Rd
6995d772c74d6391a0ba84c6854d5537 *man/mizerFMort.Rd
dbb84a2068dfdc1e2d1976a8216370f3 *man/mizerFMortGear.Rd
eaeb28adad96e914f6195a1efdd74392 *man/mizerFeedingLevel.Rd
638a5b83e99321178ef7b1c6795c9a41 *man/mizerMort.Rd
5eb0951f0bd67d5d4d88f5c9ed1d9611 *man/mizerPredMort.Rd
d058805f715fb728a6bec7e8e4e8deb9 *man/mizerPredRate.Rd
58b40f3207747d9f1f08ca753c2fae0d *man/mizerRDI.Rd
f47a8d6430a66c68ffa06f18b1875cc8 *man/mizerRates.Rd
cb442b3eddf7511bef1cde2228382a32 *man/mizerResourceMort.Rd
ba2019ba44b3ec6e9808f83690591580 *man/needs_upgrading.Rd
91264d9ae59122004468c3ad8d7ed2f2 *man/newCommunityParams.Rd
9a9dd4eb097797e4300a8e253d7c38f2 *man/newMultispeciesParams.Rd
95f98e444ee626039c913edc67bc15e4 *man/newSingleSpeciesParams.Rd
1df9fec4903af35d34419ae23c4eeff6 *man/newTraitParams.Rd
bcde18dee353917ef6ed2d4114778472 *man/noRDD.Rd
4545edb97cc532208267f0206d2fda24 *man/plotBiomass.Rd
6c300394ff65b0688e5ef9405d802d40 *man/plotBiomassObservedVsModel.Rd
369148b8cd199ad3a313862c19fcbeb7 *man/plotDataFrame.Rd
1a78e00ea65ec8e7b9a36c1afc4f3c7a *man/plotDiet.Rd
c9aaad684202b7c579175b9fdacebf97 *man/plotFMort.Rd
1b631040ddbc298a000264530eb82858 *man/plotFeedingLevel.Rd
18608bd2c4e5913416205aa40cfd6832 *man/plotGrowthCurves.Rd
47eb5b7a213fc505b602f37863239e83 *man/plotM2.Rd
5f7a41830aca47bd8fed6643ef61c94a *man/plotMizerSim.Rd
7d75c7dbb3a9be771400eb6969aaf5b8 *man/plotPredMort.Rd
4742769f6b827757443bc529b32c28b3 *man/plotSpectra.Rd
aab37b57a0d888ba91c01025ef7aeb88 *man/plotYield.Rd
47427d2d7ce1af377383b338860e32a6 *man/plotYieldGear.Rd
8bd651e1feb76a2eb306631144bda9ce *man/plotYieldObservedVsModel.Rd
5dd7e4ffd179e7931867c20bd4c3bc92 *man/plotting_functions.Rd
cbf87951216df961869ea1cb43c9e6f7 *man/power_law_pred_kernel.Rd
4ea28652571100a2764c45dab2eda000 *man/project.Rd
b63962389fa03d6c6ae2451ae17393a7 *man/projectToSteady.Rd
07741e311c1cc1f995ba1deabfd0d30d *man/project_simple.Rd
95bd04c9d529e6ba13146655bf21d607 *man/reexports.Rd
58105a2c30d42753afca061e40636874 *man/removeSpecies.Rd
d5d0ac79d1eea8e962952991ab2dbd00 *man/renameSpecies.Rd
d9c85d8edc6d60ae39ddc5eb18efb3c9 *man/resource_constant.Rd
de78d0e2bc86f29896d7d07a04b39a0f *man/resource_logistic.Rd
6bd43dd4ad00054366bb7cab138effb6 *man/resource_params.Rd
1c28c2272c3701ab6d6745d90ebfa2df *man/resource_semichemostat.Rd
07ba6470552e29aa5eacd3678c6b6267 *man/saveParams.Rd
d351f87dd7ca977cee33eb4cb7098acf *man/scaleModel.Rd
777341762054b8feda803d88e9d51a57 *man/setBevertonHolt.Rd
a636608ef24e235beb4af6f49b9d9a2c *man/setColours.Rd
4b49de6b9e25f5f829648732ef882c47 *man/setComponent.Rd
c16ff7e431d5d588515196cb119c0b04 *man/setExtMort.Rd
aa7435b0d2388b30464bcec883ea8d05 *man/setFishing.Rd
aa6c7456cccf5c64d9cf141056619022 *man/setInitialValues.Rd
3158157e280582129e0e0e9c3efba2da *man/setInteraction.Rd
35e3b029922999fc39516555b66880ac *man/setMaxIntakeRate.Rd
5b8274fbb34cd14de5611beeaa37e80f *man/setMetabolicRate.Rd
690b6353a8bdf086df258c772f43e8cf *man/setMetadata.Rd
c0476c3f4ce20a9053f519b790a12d74 *man/setParams.Rd
8647db072088c69199f780750eb3b643 *man/setPredKernel.Rd
0ec675847c5485abf152ed8f5f8d7d20 *man/setRateFunction.Rd
ea9be2876c2d5d5906075926d50d890d *man/setReproduction.Rd
04a67214fc340efce94161ce9a0f329c *man/setResource.Rd
cba973ffb3ea0aa566116b6520f92e25 *man/setRmax.Rd
94111462dbb594e617d867422a0e7e52 *man/setSearchVolume.Rd
ea686dee43415ea031ece01ab4d68fb2 *man/set_community_model.Rd
cf5b1037dab185be7fec94315b867123 *man/set_multispecies_model.Rd
1c3f21334910d8520667a000504615be *man/set_species_param_default.Rd
44ec2556ce9b82e7400ff95630b20829 *man/set_trait_model.Rd
f84379f860f8d0589c30c5727fdeaf38 *man/sigmoid_length.Rd
e36578bebb7883b102b897515cfa76eb *man/sigmoid_weight.Rd
2eeab74132f777b58f5e5aabc3535cbf *man/species_params.Rd
aef648467673fbae9c1377b64b63a485 *man/steady.Rd
181f0e213ce83668a14f986d73c08a8d *man/steadySingleSpecies.Rd
d32e95df3278c3e9da15d20c70808a0e *man/summary-MizerParams-method.Rd
2d2a0906a9774d6bdacb495dfb6fc0b8 *man/summary-MizerSim-method.Rd
c94d18c41564f3dcce4ff1e10d807177 *man/summary_functions.Rd
9f0442b8eeaf99ef92520e954ee17a78 *man/truncated_lognormal_pred_kernel.Rd
daacd7c0133b9f25e71a9e0559b32e4d *man/upgradeParams.Rd
bd4c019d5b9747f894877f1a4cac49e2 *man/upgradeSim.Rd
decb0875e99289d347ddbaf95a662f08 *man/validGearParams.Rd
ffcaa21766a7e78d504f6a4e006480f6 *man/validParams.Rd
9aa36aea8f8029f015ceb1ea254dc8c7 *man/validSpeciesParams.Rd
869e2b44cf514333d8f5267914bd45e1 *man/valid_species_arg.Rd
6541a35279a845867bc8f8faba7aad21 *man/w.Rd
dba4a2c5281feda3842e5fa722b60aa1 *src/RcppExports.cpp
9165db01d89abff57b4df6e440cb7b82 *src/inner_project_loop.cpp
332173f20d20942c02019350ea4dcadc *tests/spelling.R
3784f1dd3e6979eea4c1d0336a7188a9 *tests/testthat.R
2760fb80e8274f39965d63b2593300c5 *tests/testthat/Rplots.pdf
5e2f54849e84043cb9a2be2a979ce912 *tests/testthat/_snaps/age_mat.md
0e16d873a9c507fce4efa1fe852869a6 *tests/testthat/_snaps/plotBiomassObservedVsModel/plotbiomassobservedvsmodel.svg
6d383ca0597939213e2b35ef9b86e3c2 *tests/testthat/_snaps/plotYieldObservedVsModel/plotyieldobservedvsmodel.svg
f0a87ccae1f2191a53f6dd65e44aa9b6 *tests/testthat/_snaps/plots/plot-biomass.svg
918b26f918cbb0e7ded51672312e42f1 *tests/testthat/_snaps/plots/plot-diet.svg
061202ee4be5b1fcf5fc99b00bd2d1d3 *tests/testthat/_snaps/plots/plot-feeding-level-critical.svg
8667dd3e42c1ebf361aa5633536972cd *tests/testthat/_snaps/plots/plot-feeding-level.svg
b15f421f19278080e79bfef4eb41bda6 *tests/testthat/_snaps/plots/plot-single-growth-curve.svg
818df4e1ffcf086c4e25bf35a259ccd4 *tests/testthat/_snaps/plots/plot-spectra.svg
86e9a7e8178e52e52d46803ab848b266 *tests/testthat/_snaps/plots/plot-yield-by-gear.svg
55cbb25bbb6423a4183641c2e1793d72 *tests/testthat/_snaps/plots/plot-yield.svg
7a3848596e17f51ee3149de122d86fcb *tests/testthat/_snaps/plots/plotfishing-mortality.svg
57620c1bfc5c9486bb6103729b809e13 *tests/testthat/_snaps/plots/plotfmort-truncated.svg
47dca1bd85227b1010c690fb0b977073 *tests/testthat/_snaps/plots/plotpredation-mortality.svg
ea9d2515d19596a034fe81fd463eed61 *tests/testthat/_snaps/plots/plotpredmort-truncated.svg
f8a6ce532ccc73d4a64fb10b3940bb51 *tests/testthat/_snaps/steady.md
5bc8cfd7d0ad6d3b45ccfcc2c0945f49 *tests/testthat/assets/simc.0.4.rds
82a17a8b66df02219ff310996cd06f27 *tests/testthat/assets/simc.1.0.rds
4927e7b81a72a06eb4b3cf8ac0d60ffb *tests/testthat/helper.R
046d9347bce6aacfce8c94a59ed2fe9c *tests/testthat/test-MizerParams-class.R
c852255f91ad4165317343ad75f7d32b *tests/testthat/test-MizerSim-class.R
c46594ea1c466ba26419601bce857824 *tests/testthat/test-age_mat.R
f2e8868ad611333eead89419bfadb99d *tests/testthat/test-analytic_results.R
bbf9be6597c676c534cad63afe480d39 *tests/testthat/test-animateSpectra.R
6c2def382eeadf7d6cf27db35d4dea43 *tests/testthat/test-backwards_compatibility.R
e71ccbac4ec939638a055701336bee26 *tests/testthat/test-calibrate.R
8daecb4a883fbf2d46a09d505202aa30 *tests/testthat/test-compareParams.R
c8f7a2768c1512edfde3985fa54eef83 *tests/testthat/test-customFunction.R
2fd5c0aaa5e9ec7d164dc4783f5e387f *tests/testthat/test-data.R
759986cd4076051d4953e645cf6162cf *tests/testthat/test-extension.R
2336f29a1ccb24d4dd2abfb14b6beb61 *tests/testthat/test-get_initial_n.R
7e902c66685f04c98d32a8a55b0f67c4 *tests/testthat/test-helpers.R
afa4d08f6ffb17ab7de644295450730e *tests/testthat/test-manipulate_species.R
f91e25e463b4d26dfa78269e3af946b0 *tests/testthat/test-match.R
c394167f23e1de5b621312867ed19fce *tests/testthat/test-matchGrowth.R
2f3e3fe16903c23daf7c2291d759a2b6 *tests/testthat/test-newMultispeciesParams.R
3ebcd32ebeaa518bc5bfef082e8733c0 *tests/testthat/test-newSingleSpeciesParams.R
6a99daf5e81c811b723eb5744159bfa7 *tests/testthat/test-plotBiomassObservedVsModel.R
7c08c594a9ebc3fc08b361a9b469233d *tests/testthat/test-plotYieldObservedVsModel.R
e2bbf8a6b2271701fb2f3f6cc9372acb *tests/testthat/test-plots.R
17447c3681a9bbd66906ab33b7d782bb *tests/testthat/test-pred_kernel_funcs.R
d96e43f9899e5cb3469b0b2ca90e7635 *tests/testthat/test-project.R
8538f23184dc31d16b7db0473f268498 *tests/testthat/test-project_methods.R
ebb964de683957d6eb41eceacadf2853 *tests/testthat/test-rate_functions.R
5ef9981ac6afee8b4ec1349ef59be644 *tests/testthat/test-reproduction.R
d04132084fb313aee7b4521162711748 *tests/testthat/test-resource_dynamics.R
6cefd0735eb84f78a31ed323b8cf4b23 *tests/testthat/test-resource_logistic.R
e95057f5c54419b8541783eb32edf8a5 *tests/testthat/test-resource_semichemostat.R
5d8c22b24785c6c3739979184d796afb *tests/testthat/test-selectivity_funcs.R
7f426dfb6c87a4e4fb46aa9e096985d4 *tests/testthat/test-setBevertonHolt.R
0fd1e17712ece68c7c156db1f5954611 *tests/testthat/test-setColours.R
ed0791d8bef4aa32a9a676e95c7436d0 *tests/testthat/test-setExtMort.R
1c96fa09d606ec9e5058348573f5a02d *tests/testthat/test-setFishing.R
dc7a4472cbbfc68a4938f9e39cdd7574 *tests/testthat/test-setInitialValues.R
60fa80676482ee2c7fc46dedf8de1cbf *tests/testthat/test-setInteraction.R
268dd829f5eb2228a7cdd57a48217134 *tests/testthat/test-setMaxIntakeRate.R
66ada5c5370d92e2b856194f325abf0c *tests/testthat/test-setMetabolicRate.R
4bfdc20936b67baa7cad9a143474e0c1 *tests/testthat/test-setMetadata.R
c001d68c2d63cc19ac47bc122b0126fe *tests/testthat/test-setPredKernel.R
946dc1f0941e2b3d4f09c87689dda348 *tests/testthat/test-setReproduction.R
1db32bc9f4fe6a0bff9d3b68684d7514 *tests/testthat/test-setResource.R
b4a0bb395583d3b2c7ef761724d832ea *tests/testthat/test-setSearchVolume.R
041bf52276acac5d49de76bd74991051 *tests/testthat/test-single_species.R
5bf33697c19cae14f8bf4a530ee26399 *tests/testthat/test-species_params.R
d9d2f115ed665bed6a06116127c21527 *tests/testthat/test-steady.R
61873ccdf76020c7681a7c758e9a35f1 *tests/testthat/test-steadySingleSpecies.R
c49704c7052766b9a6d7e708d91ab5dd *tests/testthat/test-summary_methods.R
d65bead912e4659c1ee0006b1c5848d3 *tests/testthat/test-upgrade.R
6a569753a7ce39727c7caf79f7c18b71 *tests/testthat/test-wrapper_functions.R
6ec932b324befc3a2988be3f27209a6e *tests/testthat/values/getBiomass
ef076a1e608690bcfad7013d9bdc3e0d *tests/testthat/values/getCommunitySlope
b4ec56f5a5b3027584759baa927bd30c *tests/testthat/values/getDiet
7026b084b2109fe322f51824ac27f144 *tests/testthat/values/getEGrowth
287a6e9cc4f96e9a79e5e55f094f406f *tests/testthat/values/getERepro
243abd6284de01d8671e8aeec619b079 *tests/testthat/values/getEReproAndGrowth
6ddbd0d27c0b8d9aac07f240098190ba *tests/testthat/values/getFMort
24802a65b056352a03b6fd0e7cf4f675 *tests/testthat/values/getFMortGear
886f6f3dd45906f6453e55f76ee5a11b *tests/testthat/values/getFeedingLevel
8ef6fb30e2424b85d3b8d632d2dc5f48 *tests/testthat/values/getMeanMaxWeight
8d96f1b73f8bb72c3f9ce0bfd9d517e3 *tests/testthat/values/getMeanWeight
fb5e781e70c3225bc4e9d456eab1f19d *tests/testthat/values/getMort
8666816c4eb2ea2a5195818e156038da *tests/testthat/values/getN
902114401a61c5066b61a0bf788d3615 *tests/testthat/values/getPredMort
7d4f6b61caf0a63ad9f2b43a9fb70de9 *tests/testthat/values/getPredRate
799e426d34ae340e8704d5da3d4f92d1 *tests/testthat/values/getProportionOfLargeFish
7571f555f941a60f4e06998b32e16976 *tests/testthat/values/getRDD
8d80b8ccda58f830a8113f19ef17cdae *tests/testthat/values/getRDI
3d71e67e8b8415a69e63c576e875d541 *tests/testthat/values/getResourceMort
0c2a7abef93abec7671b86161ec893e9 *tests/testthat/values/getSSB
213fa6deb350699fb2f01bb2c1c3118e *tests/testthat/values/getYield
9ff4169c0b5e31d63ab3378558eb7088 *tests/testthat/values/getYieldGear
d97047011bbe1f40486cc3f4fabb492c *tests/testthat/values/plotFMort
42d3e0f17478c36ddb1e4b91b116f6ab *tests/testthat/values/projectn
62ebaf687870fa683bd1671055cf093e *tests/testthat/values/projectp
59be2a2c735ab9ce46a47c3faeb5605e *tests/testthat/values/set_community_model_cc_pp
dec283e3bbf9305f08d1a764f4d3e221 *tests/testthat/values/set_community_model_initial_n
59be2a2c735ab9ce46a47c3faeb5605e *tests/testthat/values/set_community_model_initial_n_pp
bf2a0ec1129be967ba30e5554fb0db74 *tests/testthat/values/set_community_model_intake_max
56767c8abe0b76670f3d45befcbb88bb *tests/testthat/values/set_community_model_metab
bb65910ddc69484c2b45c1b6a5287a6a *tests/testthat/values/set_community_model_mu_b
b103e3c39db82b44dbfd5d0ed3a52353 *tests/testthat/values/set_community_model_pred_rate
56767c8abe0b76670f3d45befcbb88bb *tests/testthat/values/set_community_model_psi
63f8b0acb15fcb36f3fb23d2676ac42f *tests/testthat/values/set_community_model_rr_pp
7b5ce9b95ad7eabfcab22dcab4742362 *tests/testthat/values/set_community_model_search_vol
7cd2a2c96b5963d93f762ee3ff0e520a *tests/testthat/values/set_community_phi_prey
39bd879456e0a9541f55f3738282b14c *tests/testthat/values/set_multispecies_model_cc_pp
9d97cdc55127fc250ffc25208cf5f6f5 *tests/testthat/values/set_multispecies_model_initial_n
39bd879456e0a9541f55f3738282b14c *tests/testthat/values/set_multispecies_model_initial_n_pp
783085cc2fdfc9a46936290d4c7af9ed *tests/testthat/values/set_multispecies_model_intake_max
73c3601934b468affb0ef611d01d6714 *tests/testthat/values/set_multispecies_model_maturity
b0edd9e05790618e22e79a008365b128 *tests/testthat/values/set_multispecies_model_metab
4a6d50f3901016d02918f33db9f84e32 *tests/testthat/values/set_multispecies_model_mu_b
195193c7439f2a1ce5ebaf009ce4c1dd *tests/testthat/values/set_multispecies_model_phi_prey
63d872042889d86d67c87c0709ad7bd3 *tests/testthat/values/set_multispecies_model_pred_rate
accbe65f7b58188ee093b17c4eeb297a *tests/testthat/values/set_multispecies_model_psi
0b36a7d76f95f5fa8d49e0952917c0db *tests/testthat/values/set_multispecies_model_rr_pp
6cccae4e332a14c30c60dc69ba2fc7e3 *tests/testthat/values/set_multispecies_model_search_vol
e2bf080cccd101d94c2eda4efbede49a *tests/testthat/values/set_trait_model_cc_pp
e52cb9a3ec8f347737dc4913eaa2ed70 *tests/testthat/values/set_trait_model_initial_n
e2bf080cccd101d94c2eda4efbede49a *tests/testthat/values/set_trait_model_initial_n_pp
8968380ca96b3e98e4734a1e38b11bb0 *tests/testthat/values/set_trait_model_intake_max
55d5abaa1707f3cce2496b49bf80b015 *tests/testthat/values/set_trait_model_metab
0944760b3c20591ec3c16e364b5d7f46 *tests/testthat/values/set_trait_model_mu_b
1a5fc98be92b9350360ba1d4b36dfc90 *tests/testthat/values/set_trait_model_pred_rate
149b886a6913872ab707d213efc3a8e6 *tests/testthat/values/set_trait_model_psi
0e62abb631742f763f1d387d5efc135d *tests/testthat/values/set_trait_model_rr_pp
b0f3167f20799a40e7bd728b48c55c9f *tests/testthat/values/set_trait_model_search_vol
293716b96fefd3e1d620c1f7f37908aa *tests/testthat/values/set_trait_phi_prey
b88209c2c026b5015094658130fed8f5 *tests/testthat/values/steady
