2e5ca0ac86024cc48dcd68ac8b1baa31 *DESCRIPTION
5a0a25ea4dc449279a84f04f515e0065 *NAMESPACE
f3a9a5eae18cb82205c2b929fb3e9042 *R/rbamtools.r
a0ef85246b352b7143022730281fdffd *inst/doc/rbamtools.R
3fff3999bb28d29cf005c9cec12ddf39 *inst/doc/rbamtools.Rnw
ba4865edee1ea69782257a1ea08f8761 *inst/doc/rbamtools.pdf
fc9a0f34fb3246a8a6327aab59f11185 *inst/extdata/accepted_hits.bam
ae605096a18a55922d8c9fd750b919fa *inst/extdata/accepted_hits.bam.bai
6ab922048f9db7b14b34dd43ea4eddb6 *man/as.data.frame-methods.Rd
3d7b1246fb6cabfc67074d73651373ea *man/bamAlign-class.Rd
834772109d6ed6bb079c0adc90241a25 *man/bamClose-methods.Rd
f64d314e1eccfee3fdb634c2803a3a25 *man/bamGapList-class.Rd
9c911ad399d71c45f84aa581b7f55253 *man/bamHeader-class.Rd
38d5360cb908c6907b17d1d5844a477a *man/bamHeaderText-class.Rd
eef3fa2ed6a1a88aa527760f659909cb *man/bamRange-class.Rd
b463cfa252791c7b35cdcb561a775431 *man/bamRange.Rd
87ac2982d50670f6afba0b878138c342 *man/bamReader-class.Rd
03c9354d0c9cd87f5d65a5e9424ea7c5 *man/bamReader.Rd
8ccf96439849861ddfd4254bf64eaaad *man/bamWriter-class.Rd
f94fb3837aa4999eefdcd7d1b9a6a55d *man/bamWriter.Rd
d02d631ce7033fa6ee91860508aa10dc *man/filename-methods.Rd
15aa8fbbd454b7e4d8dbbc69eef3e367 *man/gapList-class.Rd
5254df8a7697cd1b7cac3b41b6c9f620 *man/gapSiteList-class.Rd
51c82816b832dd64ebe7fe015bc69cd2 *man/getHeaderText-methods.Rd
575e6401e1a4fb3b77eca501bcfd239f *man/getNextAlign-methods.Rd
61ece04498943dd1a861bf0b6dc575e0 *man/getVal.Rd
ed88cdfa7a2aa82995daf3100a13184d *man/headerLine-class.Rd
e746e233be84d9ca887d3f5dcd81bead *man/headerProgram-class.Rd
5a0f2d835902efb80b9669e0a4fbac7d *man/headerReadGroup-class.Rd
a0980a4317e856c779589bd9d2a86794 *man/isOpen-methods.Rd
46a3bed4a8805964cde4772e76b82398 *man/rbamtools-package.Rd
6609cee73dba1f67ff87c8e87be9cef7 *man/readPooledBamGapDf.Rd
a6649ef5a92a29f93f67407453e911a5 *man/readPooledBamGaps.Rd
9c222e0b4daa9244c8100bb28d26a8a2 *man/refSeqDict-class.Rd
bb61babfa2eb94a8095a299572d405f2 *man/setVal.Rd
1909330c349a0b8654595c7accb89fb1 *src/Makevars
b2ab8d847907bfe5f92a3c04cdf4d2a0 *src/Makevars.win
b74082e17797d05ad46ff0385f9fd81e *src/align_list.h
ea3b81784bdaebedf1be7dca8067e7c1 *src/bitmask.h
c2c03b3267d839dc625b841d86ce6e1b *src/gapSiteList.h
ee1821003a74d0f27309fc4eece41484 *src/gapSiteListList.h
b0bc76d94eb18fac0a26f71fa709b64d *src/gap_list.h
c0af9acdaf1e9b5ebb32fb70dc95a409 *src/rbamtools.c
8699266b7ab5dc05ef335edc9b885b48 *src/rbamtools.h
2e4c02f66ddf5b45e5f82ff579740386 *src/samtools/LICENSE
8d77fcb173730f7429f5436942ce46d2 *src/samtools/bam.c
392dc34895ea0b679b1881a9714e79b3 *src/samtools/bam.h
cf98ab784ab45ae45d1a56733ce9b0af *src/samtools/bam_aux.c
7310a1f6f1407803b50c6fb66593c39a *src/samtools/bam_endian.h
34f18a9811c5cf5c915a15ce5c3de2ac *src/samtools/bam_import.c
94f0a1fce821685bea521911cf7f1425 *src/samtools/bam_index.c
490d80f9740587061683b0f2e26c6dd2 *src/samtools/bam_sort.c
5772fa306bb37b27af4122aaa28c7193 *src/samtools/bgzf.c
f732fd642ddadc7937b27a35d586a834 *src/samtools/bgzf.h
77c3ff341ae1d2d7138a46fb91a19d4d *src/samtools/faidx.c
060c5e036ec8bd44ec5e25549a1e160f *src/samtools/faidx.h
6615679e1cf61f3c91ff8e2ca55a31a2 *src/samtools/khash.h
4cbba656024a5136ba479c11b48aaaa9 *src/samtools/kseq.h
24ef45db4e129ff34aa982837cc48f7e *src/samtools/ksort.h
7fd7e5f5701b912345a4005add5076c1 *src/samtools/kstring.c
f7c10b1c27b0fa013aba458458b8fe21 *src/samtools/kstring.h
5a7cdd8dc3ba6bfd63555705ce584efa *src/samtools/razf.c
799bfb3cc0b3c7a25f84699588aa1d96 *src/samtools/razf.h
f9718d487a6cbcda29ca3286b6987b32 *src/samtools/sam.c
eb06482d20c8cbceead50f119c2a0229 *src/samtools/sam.h
752b4fd51d86c25f2cd01122f6f6371e *src/samtools/sam_header.c
8dd7c977d83077c0554fad6a1bb78043 *src/samtools/sam_header.h
45b41d074c6d2bbdb95082eba89efe6f *vignettes/rbamtools.Rnw
10cfb2f92c2c521a999b62445b9632c2 *vignettes/rbamtools.bib
ff81f08fc9f21575e501ab82d310f110 *vignettes/rbamtools.log
5332da478136b0144915915f7c2e8e05 *vignettes/rbamtools.synctex.gz
