eb4a2cd8c55b978dafd40436c5b3d484 *DESCRIPTION
20051f832b5d00d22a2005b02d5fc229 *NAMESPACE
1a809bfc434fe42a9a646849227c90f0 *R/BayesCptCI.R
6d4281d6b8910d11110bbfaa378f4478 *R/CombineCaseControlC.R
d738d2c16dc7d51c9853f3220c7360fb *R/CombineReadsAcrossRuns.R
40cd0c082bb8248dee113a884855f34a *R/ScanBIC.R
b4ef65af50ef6e8bd68b2184f1ac9298 *R/ScanCBS.R
176681f63f2d141bb1d872728d3fa1b0 *R/ScanCBSPlot.R
2e61fe9296eaa58004ec7ad2919932fc *R/ScanCBSSimPlot.R
03863da4bb99ce2d31df44d5329712c8 *R/ScanIterateGrid.R
aa0c25fc90af8dbdef20b7f780061841 *R/ScanStatNewComp.R
08e4fdfb11815c9b6359cb9081b19e3f *R/ScanStatRefineComp.R
97b06a27ad837c2f93329897f02d9301 *R/SegSeqResProcess.R
8216b1945ea89356d2960128407c2c4c *R/getAutoGridSize.R
a6583f994e90168868099d1d8f1b062e *R/getCountsInWindow.R
f6406872342adb8326c8e99cb8862777 *R/hppSimulate.R
37298238306ff52de7cd53dd4d8ca569 *R/nhppRateEstimate.R
52679f3de90798aa38a4940e4c8cc456 *R/nhppSimConstWindowAnalysis.R
fc6dc4d8a4db8df9902801cd878a2b5f *R/nhppSimConstWindowGen.R
c60790aae1486a1ee8d9065140550fb9 *R/nhppSimulate.R
c7e03ca57d50fa30dff75061691c8b12 *R/nhppSpike.R
278b4b2909da029b440f43fddb80c9b6 *R/nhppSpikeConstWindow.R
69d149acefb5304a0a5eb7441b47cf3b *R/readInput.R
00575734da7df66e82c6dbcb49389b59 *R/readListInputFile.R
7d80cce5e9929332c169c05e61214630 *R/readSeq.R
dca427da97c63b840cfce5d0c2de802a *R/readSeqChiang.R
6fe4b47fd2160fbb905d17f151620f5f *R/readSeqELANDPaired.R
00a79e7ba483d21eed7021e2f1afe593 *R/relCNComp.R
eca80bed897ca04fa076a6c7be1f4a3e *data/JSSim_Meta.txt.gz
dddaadbabd500900e0e432d875ac5297 *data/JSSim_NormalSim1.txt.xz
a8a9f8215b1782c1aa25e4c644a21fd1 *data/JSSim_NormalSim2.txt.xz
f8ef36b3aa8602518209f2da20e61181 *data/JSSim_SpikeMat.txt.gz
7d9f224d99d26abfcc46d0e9c2340af5 *data/JSSim_TumorSim1.txt.xz
2be3284bb6ca1d7c6b7bbb8f607fbe86 *data/JSSim_TumorSim2.txt.xz
426c1250b19fad8b1b9402a239af3bc8 *man/BayesCptCI.Rd
a9faad02a0dd24b048741947b272b2c4 *man/CombineCaseControlC.Rd
0c81667a38dc01c3c9c5a8572cb0db84 *man/CombineReadsAcrossRuns.Rd
c902c11794c5f23f76005678a4a6aab6 *man/JSSim_Meta.Rd
1bec501b1fc84ba0d08db494ed9040e9 *man/JSSim_NormalSim1.Rd
0bbdcdbced781a580c06fe6f09900dff *man/JSSim_NormalSim2.Rd
1c3da88c84222a45b1496e5f6b905537 *man/JSSim_SpikeMat.Rd
4f1465ee4dfa222c87e0f266d1cc1d75 *man/JSSim_TumorSim1.Rd
bf84a2ec1e79a25063fc37f1ca55e23e *man/JSSim_TumorSim2.Rd
b1715f3ad422a650bca24043cb60d499 *man/ScanBIC.Rd
9f27885f1783989f821e7a7bfd15aa00 *man/ScanCBS.Rd
9f832ce82b04ba4fbe8da14a02a54f08 *man/ScanCBSPlot.Rd
41f4b1fce29d9e4ca3b926503ab92a0c *man/ScanCBSSimPlot.Rd
35ead92b0c13fc9cde9393b8fc7e012c *man/ScanIterateGrid.Rd
9ad8fb1cddfc1db3c7e290a18ca5cd7a *man/ScanStatNewComp.Rd
64e826b06e60270be6e93146e6e026f3 *man/ScanStatRefineComp.Rd
4bdfb3e8f412dddb5ab251a798b94e94 *man/SegSeqResProcess.Rd
3a890eda36fba631d343e6688a2f9d94 *man/getAutoGridSize.Rd
1a9a601300a8795cb7679b03c5244c4d *man/getCountsInWindow.Rd
39e7651a8efdd5f1070e3774c7a96374 *man/hppSimulate.Rd
2d6d940137f7f13f54a18972cdd03156 *man/nhppRateEstimate.Rd
01dde72e23a7c3933ffc1e0d98f40adc *man/nhppSimConstWindowAnalysis.Rd
f95e35d97208b3e6caefd029d9f046d4 *man/nhppSimConstWindowGen.Rd
a40d83865d5aba2f220216c71803f81c *man/nhppSimulate.Rd
7df6829f46cbc8c0a1ee34a953f3705b *man/nhppSpike.Rd
244de50df94d7e1285b9ca2a1f373fc5 *man/nhppSpikeConstWindow.Rd
e4d17461a30dedfe63363218f5251f39 *man/readInput.Rd
2e8642a5ba20432028ad5a6d9ba526f5 *man/readListInputFile.Rd
0ad467abe0646e340f0df0e7b1353a45 *man/readSeq.Rd
7e1c4e95fd37460850d2d505379ccd7c *man/readSeqChiang.Rd
0aea2162a0f8cb8de81a385ad0ab9928 *man/readSeqELANDPaired.Rd
e5fead86f7bc3dd699aa17b880147775 *man/relCNComp.Rd
ab5b61650c54fd53cf0ebd25336fd4c1 *man/seqCBS-package.Rd
072b9e90a79b9f6369a703ef90286c75 *src/seqCBS.c
