761db9e34d89c82392abad7ccfaf1115 *DESCRIPTION
90f5f64698b3f8546f0f734ce592eed0 *LICENSE
5895ff6f4b71f84adeb23c4c629ee2fd *NAMESPACE
a6c8eb3ed55effde4685faee0a7136bb *NEWS.md
86548a72537d3abcf5be584eabfd7d16 *R/class.R
803870d02c00c0aacdc124779595f390 *R/cnv_helper.R
085ba83e3c22adf81c24d4f313097c8e *R/data.R
82517da82306e9c36afaec36b6c2da19 *R/draw_series.R
17e7a738e4951e8bf14d8a7db93c4e8e *R/get_series.R
55ea3a80d9599fe74343550d3179090a *R/hello.R
84dd485324736275df0d38a4435d79d2 *R/prepare_series.R
f2cb2ea7211f51f930fd72d98026b505 *R/read_series.R
a1e36b9914ae1fff4617157f4fb5ea4a *R/sigminer.R
9f92f836fb902abd21442da4e358716a *R/signature_series.R
692bbc3a2e8bd0f8d5a6e8bd33ea53fe *R/test.R
8d2487dbf45064f33b08e5a80830b68e *R/utils-pipe.R
3859fa5d1ea80b408dd5536e72c78fa2 *R/zzz.R
5a8ab9460dbf3c76a25e728f781525cd *README.md
e3b6ac885bd83a98d829291f4d3d486a *build/partial.rdb
fe83e3a1bd5895f02d848b60f72f8b57 *build/vignette.rds
d3d9f942b87249a47f7794facc5e55a5 *data/centromeres.hg19.rda
66bcbac28c945b880bf07f0d3410f143 *data/centromeres.hg38.rda
80787271d57544518853d8c691c8fdb2 *data/chromsize.hg19.rda
8c245814898b43e4c3614d360941a3a2 *data/chromsize.hg38.rda
8d9f18d219ea7e10ababa17ca8f7ecc7 *inst/doc/sigminer.R
9ac7dfc7b63eafb66ac16af04002ea86 *inst/doc/sigminer.Rmd
c6ee163b482c7a81d14961c363f36966 *inst/doc/sigminer.html
21ecf983e645ba1404da85898a1868b2 *inst/extdata/blood_normal.segtab.txt
3d24a65ba5ddbe5790fa3d3da7147119 *inst/extdata/example_cn_list.RData
b869391cdccc84740b0ba4e977ad54ac *inst/extdata/metastatic_tumor.segtab.txt
4a28b17ea3c450f58d3b0d25da2d0a96 *inst/extdata/solid_tumor.segtab.txt
9371bc15caa55a2b820c1964363c5937 *inst/extdata/toy_cn.RData
e9a80e5e1e88b3077ac808d9606ba785 *inst/extdata/toy_cn_components.RData
027b67c2b51e1d7ac48ad6d37e736263 *inst/extdata/toy_cn_features.RData
c9ca6a19ce13b210484897c3f728a86e *inst/extdata/toy_cnlist.RData
ab87e62df7dbf31b95d91276ff324dbc *inst/extdata/toy_copynumber.RData
b9b7c98a30eb6c6e7e1f364ebf5f7b66 *inst/extdata/toy_copynumber_prepare.RData
7c6252432414147a8eef94384e8ab8c6 *inst/extdata/toy_copynumber_signature.RData
9460090d01474dcc34f60936130b8dbd *inst/extdata/toy_segTab.RData
7abab37f353d89b735c9d24a33b32b26 *inst/figures/array2.png
cbeb21d8cdaf2a81c2f516973e312681 *inst/figures/barchart.png
e3d055610565332220419dcb581729c3 *inst/figures/sigminer.png
0f387b1dd83142be31e66297f1d791da *inst/test/develop.R
49576a171a0acffa3165cec5865184a2 *inst/test/test.R
f3306c0f9f553b128af6d42765cb370c *inst/test/use_hexsticker.R
062b4479b91619b997ef1c3cb08ead83 *man/CopyNumber-class.Rd
603dbce3ae0eff5496f2c0dae53fca39 *man/GenomicVariation-class.Rd
8c9524f380e857f41090340cad68e76d *man/MAF-class.Rd
5a0e5b8967b970f02103fe6e8d6d0f6f *man/centromeres.hg19.Rd
3e4f25e257b46c1cc8fe071dd5622a9b *man/centromeres.hg38.Rd
a0f08abf4dae18a02539f9ca08ed6deb *man/chromsize.hg19.Rd
269f6f1957410cf81163504b8706fd67 *man/chromsize.hg38.Rd
123974b1db710bd8a942210a05e4baaa *man/draw_cn_components.Rd
b78ac6c21812a2ff0dbfc1c629de2d4d *man/draw_cn_distribution.Rd
a1a1979ba0770fac1bad29e9600abe51 *man/draw_cn_features.Rd
ddd5123e054706bac1b7a99e2169b431 *man/draw_sig_activity.Rd
01c821ee5fa8ba5173863727ebfa1c9a *man/draw_sig_corrplot.Rd
b7a91a0422c265dbc1e8940c7e4cf716 *man/draw_sig_profile.Rd
a12e8724ca9b3484dab0ba6e109680e4 *man/draw_subtypes_comparison.Rd
e3d055610565332220419dcb581729c3 *man/figures/logo.png
aeeac33336d4ec305715c8c7ad02f08d *man/get_ArmLocation.Rd
de2915d8805d87ae06215fdb0bff91d3 *man/get_LengthFraction.Rd
1f23dfa37822030f1907887710c6bdd0 *man/get_cnlist.Rd
04d40387b4346f4d47440d0f5bca6008 *man/get_cnsummary_sample.Rd
9405897573bf33db5291e39a51849995 *man/get_components.Rd
326de94beb0a60cfbf9baf36248da8aa *man/get_features.Rd
971f95d5d605b9800fccb248735d3078 *man/get_matrix.Rd
2f06334cbdcf73336cae7cfc5cf0d77d *man/hello.Rd
1f7896a1b866ff9ae89ba35be7c7b6f1 *man/pipe.Rd
61610edf925aa3198712820ca88ab7eb *man/prepare_copynumber.Rd
e1ea6602650a22e1c50707ab53f1acf9 *man/prepare_maf.Rd
b941bc5df6f1e45b6a5cf9e32374143c *man/read_copynumber.Rd
acd29e6f89d5d0017ea103e35d7e30ad *man/read_maf.Rd
cbb7fe2e8c23cceb78547aa6174013ac *man/read_variation.Rd
26a38f3ca21b9e5e50a8e1cecb53efe6 *man/sig_assign_samples.Rd
6279aa708cd5f7f4544648f50b3a37bc *man/sig_estimate.Rd
1cb958d1ca845b07aa11b3b4127ad37a *man/sig_extract.Rd
ac44e36e2b5cfaf9388397ae4f32f15f *man/sig_get_activity.Rd
9aca9a6d65abfe08a278821e83943418 *man/sig_get_correlation.Rd
8c5eafbbc12a0608c7915b820e41994e *man/sig_get_similarity.Rd
06fb1af32f8ca6a6b7f7aac74c08874c *man/sig_prepare.Rd
3c22098830b2f864c9fe1f76350c5fa0 *man/sig_summarize_subtypes.Rd
905af77eb4324e131d76a01cdd4c32f7 *man/sigminer.Rd
4ee8f0c93d442b01e65fe1321812ace3 *man/subset.CopyNumber.Rd
eb9ad753e05f0807070dd44ff4f739bf *man/test_run_components.Rd
363e0325f98a020789bd8df88d2d2845 *tests/testthat.R
cc42a9f470ce6642b3e11497c5870ebe *tests/testthat/test-get_series.R
325718a93067ed40b9e36894173f372b *tests/testthat/test-prepare_series.R
2753a40c40ddcf3f2fdd25605f2005e2 *tests/testthat/test-reading_data.R
f68c56b8a53e1b00f5b698ea1d40f6a0 *tests/testthat/test-sig_analysis_series.R
9ac7dfc7b63eafb66ac16af04002ea86 *vignettes/sigminer.Rmd
